Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0077 ATGGCTGACCATTCTTCCAATCGCGATACTGATTCAGGGTTTGATCATGGCTCACCTCAACCACGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGGAACTTCCAGCTTCCAACCTCCCCAGAGTTTCTTTTCGATGAAGAAGCTCGTCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACTGGTTGCGGTTACCTCGCTGGTGCTGTCGGCGGAGCATCTACAGGACTCGTATCCGGCGTCAAATCTTTTGAATCAGGTGATACTATGAAACTCCGGATCAATCGGATCCTGAACTCGTCTGGTCATTCAGGGCGTCTTTGGGGGAATCGGCTCGGCGTGATTGGGTTGCTTTATGCTGGTTTGGAGAGCGGGATTGAGGCTGTGAGGGATACGGACGATGTGTGGAACTGTATTGCAGCAGGACTTGGCACTGGTGCGCTTTATCGTGCAGCAAGAGGGGTGAGATCGGCGGCGGTGGCCGGTGCTATTGGCGGTGTCGTGGTTGGCGTGGCGGTGACGGGTAAGCAGATGTTGAAGCGCCACCGTGACCTACGCAGGTGCATTGCTTCTATCATTTCGCATTTCTATACTTACATCATGTTCAGCTTTTTTCGTTTTAGCAACCTTAACTATTATAGAAGACAGTTACAGGCATTAAAAGAACTGGCAGGTCCTACCACATTCTTTGGCTTCAACAACGTGGGAAGTTTACCGCCTTCGCAAAAATTTCCCACTTTCGCTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTTCCTTCAATCTCCATCTGTTTCATCTTCCTCTTTCTTCTCTAACATTCCGCAGACTACCCCTGTTCTTAGCCCTTCCGTATGGTATCCCTTAACTCCTTTTCCCACATTGAGACAGAAGTTTAATGCTTGTTCTCCTCTCTATATGGATTGCAAGTTTGGCTTTTCTGTTACAGATTTCCTTTCTCAGAATAGCTCTGGGCAAATTCATAATGTTGTTCTGTTTCTTACTTGGTGGGCCATGGCAGGTTTAGCTCCAGAAGGATCCCAGTTTGATTCTCGCCAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTCTTTACCTCATATGATGAAGTATATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGTCAGGCATTAGTTCTGGCTCCGACTAGGGAGCTGGCTCAACAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCTTGTGTAGGAGGGACAAGCGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTAGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTACGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCAGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATTTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGTTCGTCTCGTGTCCTCATCACAACTGACTTGTTAGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTACCAACCCAACCAGAAAATTACCTTCATCGAATTGGGCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGACAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA 2313 45.96 MADHSSNRDTDSGFDHGSPQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCIAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTGKQMLKRHRDLRRCIASIISHFYTYIMFSFFRFSNLNYYRRQLQALKELAGPTTFFGFNNVGSLPPSQKFPTFARCALPNTRLQLTDQIRRVWQTLASFLQSPSVSSSSFFSNIPQTTPVLSPSVWYPLTPFPTLRQKFNACSPLYMDCKFGFSVTDFLSQNSSGQIHNVVLFLTWWAMAGLAPEGSQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDDRMLFDIQKFYNVVIEELPANVADLL 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 628920 635694 - CePI673135_09g000770.1 Cec09g0077 210587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0077 770 Gene3D - 387 605 IPR027417 -
Cec09g0077 770 FunFam Eukaryotic initiation factor 4A-II 385 604 - -
Cec09g0077 770 CDD DEADc_EIF4A 402 599 - -
Cec09g0077 770 Gene3D - 606 770 IPR027417 -
Cec09g0077 770 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 428 598 IPR014001 -
Cec09g0077 770 SMART ultradead3 416 613 IPR014001 -
Cec09g0077 770 Pfam DEAD/DEAH box helicase 422 584 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cec09g0077 770 SMART helicmild6 650 731 IPR001650 -
Cec09g0077 770 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 609 770 IPR001650 -
Cec09g0077 770 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 397 425 IPR014014 GO:0003724(InterPro)
Cec09g0077 770 CDD SF2_C_DEAD 610 740 - -
Cec09g0077 770 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 544 552 IPR000629 -
Cec09g0077 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 751 IPR027417 -
Cec09g0077 770 MobiDBLite consensus disorder prediction 1 22 - -
Cec09g0077 770 FunFam Eukaryotic initiation factor 4A-III 605 770 - -
Cec09g0077 770 Pfam Tim17/Tim22/Tim23/Pmp24 family 63 173 - -
Cec09g0077 770 Pfam Helicase conserved C-terminal domain 623 731 IPR001650 -
Cec09g0077 770 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 392 756 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1370 Cec-Chr8:25606474 Cec09g0077 Cec-Chr9:628920 3.90E-62 dispersed
Cec09g0077 Cec-Chr9:628920 Cec11g1719 Cec-Chr11:31439958 4.40E-52 dispersed
Cec01g0530 Cec-Chr1:5417704 Cec09g0077 Cec-Chr9:628920 3.80E-39 transposed
Cec01g0826 Cec-Chr1:9228437 Cec09g0077 Cec-Chr9:628920 2.20E-18 transposed
Cec02g1959 Cec-Chr2:37458746 Cec09g0077 Cec-Chr9:628920 1.20E-53 transposed
Cec06g1009 Cec-Chr6:14949004 Cec09g0077 Cec-Chr9:628920 2.20E-50 transposed
Cec10g1195 Cec-Chr10:26037240 Cec09g0077 Cec-Chr9:628920 1.20E-141 transposed
Cec10g1976 Cec-Chr10:34541899 Cec09g0077 Cec-Chr9:628920 1.20E-54 transposed
Cec07g1507 Cec-Chr7:30669075 Cec09g0077 Cec-Chr9:628920 8.50E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0077 K03257 - csv:101221456 816.224