Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0082 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACATTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGCGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 756 42.86 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 715298 717707 - CePI673135_09g000820.1 Cec09g0082 210592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0082 251 SMART PHD_3 197 245 IPR001965 -
Cec09g0082 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cec09g0082 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cec09g0082 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Cec09g0082 251 MobiDBLite consensus disorder prediction 147 174 - -
Cec09g0082 251 FunFam PHD finger alfin-like protein 190 246 - -
Cec09g0082 251 Pfam PHD-finger 198 244 IPR019787 -
Cec09g0082 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cec09g0082 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cec09g0082 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cec09g0082 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0477 Cec-Chr7:5122799 Cec09g0082 Cec-Chr9:715298 3.20E-40 dispersed
Cec08g1020 Cec-Chr8:22143498 Cec09g0082 Cec-Chr9:715298 2.10E-112 dispersed
Cec09g0082 Cec-Chr9:715298 Cec10g0733 Cec-Chr10:10707031 1.20E-94 dispersed
Cec11g0170 Cec-Chr11:1873021 Cec09g0082 Cec-Chr9:715298 5.30E-110 wgd
Cec03g1587 Cec-Chr3:33977808 Cec09g0082 Cec-Chr9:715298 2.00E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30150 PF12165 Alfin 7.50E-68 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0082 K26274 - csv:101222322 501.901