Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec09g0082 | ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTTTTCAGTGATTTTAGGGGACGAAGAAACGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACATTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGCGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA | 756 | 42.86 | MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 715298 | 717707 | - | CePI673135_09g000820.1 | Cec09g0082 | 210592 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec09g0082 | 251 | SMART | PHD_3 | 197 | 245 | IPR001965 | - | |
Cec09g0082 | 251 | ProSiteProfiles | Zinc finger PHD-type profile. | 195 | 247 | IPR019787 | - | |
Cec09g0082 | 251 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cec09g0082 | 251 | SUPERFAMILY | FYVE/PHD zinc finger | 187 | 249 | IPR011011 | - | |
Cec09g0082 | 251 | MobiDBLite | consensus disorder prediction | 147 | 174 | - | - | |
Cec09g0082 | 251 | FunFam | PHD finger alfin-like protein | 190 | 246 | - | - | |
Cec09g0082 | 251 | Pfam | PHD-finger | 198 | 244 | IPR019787 | - | |
Cec09g0082 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 246 | IPR013083 | - | |
Cec09g0082 | 251 | CDD | PHD_AL_plant | 197 | 247 | IPR044104 | - | |
Cec09g0082 | 251 | PANTHER | CPG BINDING PROTEIN | 9 | 250 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cec09g0082 | 251 | ProSitePatterns | Zinc finger PHD-type signature. | 198 | 244 | IPR019786 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec07g0477 | Cec-Chr7:5122799 | Cec09g0082 | Cec-Chr9:715298 | 3.20E-40 | dispersed | |
Cec08g1020 | Cec-Chr8:22143498 | Cec09g0082 | Cec-Chr9:715298 | 2.10E-112 | dispersed | |
Cec09g0082 | Cec-Chr9:715298 | Cec10g0733 | Cec-Chr10:10707031 | 1.20E-94 | dispersed | |
Cec11g0170 | Cec-Chr11:1873021 | Cec09g0082 | Cec-Chr9:715298 | 5.30E-110 | wgd | |
Cec03g1587 | Cec-Chr3:33977808 | Cec09g0082 | Cec-Chr9:715298 | 2.00E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30150 | PF12165 | Alfin | 7.50E-68 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec09g0082 | K26274 | - | csv:101222322 | 501.901 |