Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0164 ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGACTGGCTGATGAACATGAAAATGATGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACTAATCAACAAAATGATAGGCTCACTGATGAAGCATTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCCTCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCATCCTTCAATAGAAATGAGAGAAACCGTTGTACTTCTAAGCTGGCCAATGCATCTTGGGATCAAGGGCACCGTGCACGCGGTATCCAATGGCTGACACTAACGTTAGGGTTGAATCAAATCTGGTCTGAATGA 975 45.74 MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENDGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTASFNRNERNRCTSKLANASWDQGHRARGIQWLTLTLGLNQIWSE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1428925 1434461 + CePI673135_09g001640.1 Cec09g0164 210674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0164 324 Gene3D - 216 275 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec09g0164 324 Pfam CCT motif 154 196 IPR010402 GO:0005515(InterPro)
Cec09g0164 324 CDD ZnF_GATA 230 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g0164 324 PANTHER GATA TRANSCRIPTION FACTOR 28 29 296 IPR045280 GO:0006355(InterPro)
Cec09g0164 324 ProSiteProfiles CCT domain profile. 154 196 IPR010402 GO:0005515(InterPro)
Cec09g0164 324 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cec09g0164 324 Pfam GATA zinc finger 230 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g0164 324 ProSiteProfiles GATA-type zinc finger domain profile. 224 285 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g0164 324 SMART GATA_3 224 277 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g0164 324 ProSitePatterns GATA-type zinc finger domain. 230 257 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g0164 324 SMART tify_2 78 113 IPR010399 -
Cec09g0164 324 Pfam tify domain 84 112 IPR010399 -
Cec09g0164 324 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 225 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1190 Cec-Chr8:23812317 Cec09g0164 Cec-Chr9:1428925 1.50E-49 dispersed
Cec09g0164 Cec-Chr9:1428925 Cec09g1744 Cec-Chr9:32728035 2.10E-56 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30158 PF06203 CCT 9.60E-15 CL0281 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0164 - - - 0.0