Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec09g0164 | ATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGTGCAAGACCAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGACTGGCTGATGAACATGAAAATGATGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACTAATCAACAAAATGATAGGCTCACTGATGAAGCATTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCCTCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCATCCTTCAATAGAAATGAGAGAAACCGTTGTACTTCTAAGCTGGCCAATGCATCTTGGGATCAAGGGCACCGTGCACGCGGTATCCAATGGCTGACACTAACGTTAGGGTTGAATCAAATCTGGTCTGAATGA | 975 | 45.74 | MDSIHASDGRMHISHAQHSMHTQSVQDQEHHDLHYMSNGNGLADEHENDGHGIMVVEREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTASFNRNERNRCTSKLANASWDQGHRARGIQWLTLTLGLNQIWSE | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1428925 | 1434461 | + | CePI673135_09g001640.1 | Cec09g0164 | 210674 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec09g0164 | 324 | Gene3D | - | 216 | 275 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cec09g0164 | 324 | Pfam | CCT motif | 154 | 196 | IPR010402 | GO:0005515(InterPro) | |
Cec09g0164 | 324 | CDD | ZnF_GATA | 230 | 272 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec09g0164 | 324 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 29 | 296 | IPR045280 | GO:0006355(InterPro) | |
Cec09g0164 | 324 | ProSiteProfiles | CCT domain profile. | 154 | 196 | IPR010402 | GO:0005515(InterPro) | |
Cec09g0164 | 324 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Cec09g0164 | 324 | Pfam | GATA zinc finger | 230 | 266 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec09g0164 | 324 | ProSiteProfiles | GATA-type zinc finger domain profile. | 224 | 285 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec09g0164 | 324 | SMART | GATA_3 | 224 | 277 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec09g0164 | 324 | ProSitePatterns | GATA-type zinc finger domain. | 230 | 257 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec09g0164 | 324 | SMART | tify_2 | 78 | 113 | IPR010399 | - | |
Cec09g0164 | 324 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Cec09g0164 | 324 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 225 | 285 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec08g1190 | Cec-Chr8:23812317 | Cec09g0164 | Cec-Chr9:1428925 | 1.50E-49 | dispersed | |
Cec09g0164 | Cec-Chr9:1428925 | Cec09g1744 | Cec-Chr9:32728035 | 2.10E-56 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30158 | PF06203 | CCT | 9.60E-15 | CL0281 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec09g0164 | - | - | - | 0.0 |