Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0167 ATGCCGTCCGTCTATGGAGCTCGTGTGACCACTTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTCTTACGTACTCATAAACCTTTGTCAGTGGAGTTGGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGGGATGTCTACATTCCTCGTGGTGTCGCTGTCCCGGCACTGGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACAGGTGGCGACTTATATGCAACTGTCTTCGAGAATAGTCTAATGGAGCACCACATTGCACTTCCTCCTGATGCTATGGGTAAAATTACCTATATTGCAGCGCCTGGCCAATATTCATTGAAGGATACTGTTTTAGAGCTCGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACCGGGCAGCGTGTTCTTGATGCACTCTTCCCTTCCGTTCTTGGTGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGATGGGCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCCGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCCTACCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAGTGTCTTGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTCGGTGCAGTTTCTCCCCCTGGAGGAGATTTCTCTGATCCAGTGACGTCTGCCACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCCGTGAATTGGCTAATTTCATACTCAAAATACTCTTCTGCGTTGGAATCTTTCTATGAGAAGTTTGATCCAGATTTTATTAACATCAGAACGAAGGCCCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGAAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGTCTGGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTCACTGAAAAATTTAAGAAGCTACATGAAGATCTGACAAATGGTTTCCGTTCTCTCGAGGACGAAACCCGGTAG 1872 45.03 MPSVYGARVTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVFENSLMEHHIALPPDAMGKITYIAAPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALTEKFKKLHEDLTNGFRSLEDETR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1452775 1458503 - CePI673135_09g001670.1 Cec09g0167 210677

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0167 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Cec09g0167 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Cec09g0167 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Cec09g0167 623 Gene3D - 134 205 - -
Cec09g0167 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Cec09g0167 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Cec09g0167 623 Gene3D - 20 89 IPR023366 -
Cec09g0167 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cec09g0167 623 Gene3D - 91 457 IPR027417 -
Cec09g0167 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 11 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(PANTHER)
Cec09g0167 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cec09g0167 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Cec09g0167 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cec09g0167 623 Gene3D - 459 615 IPR024034 -
Cec09g0167 623 CDD V_A-ATPase_A 88 460 - -
Cec09g0167 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Cec09g0167 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cec09g0167 623 FunFam V-type proton ATPase catalytic subunit A 192 457 - -
Cec09g0167 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Cec09g0167 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cec09g0167 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
Cec09g0167 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 463 IPR027417 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0167 K02145 - - csv:101216234 1210.28
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1722 . 1 1030 Primary Pumps ATPases(2) AT1G10130 80.0 0.0e+00 1600.9
Cec02g2193 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.9
Cec08g1506 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.8 4.8e-299 1023.8
Cec02g0507 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 4.3e-292 1000.7
Cec02g0507 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1232.6
Cec08g1506 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.3 0.0e+00 1189.1
Cec02g2193 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 1.1e-298 1022.7
Cec02g0507 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.8 0.0e+00 1233.0
Cec08g1506 . 1 807 Primary Pumps ATPases(2) AT4G39080 73.8 0.0e+00 1185.2
Cec02g2193 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.2e-297 1019.2
Cec08g1497 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cec11g1625 . 85 222 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cec08g1496 . 2113 2244 Primary Pumps ATPases(2) AT4G34720 100.0 2.4e-57 218.4
Cec08g1497 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cec11g1625 . 59 222 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Cec08g1496 . 2087 2244 Primary Pumps ATPases(2) AT1G75630 80.7 2.5e-63 238.8
Cec08g1497 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec11g1625 . 60 222 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec08g1496 . 2088 2244 Primary Pumps ATPases(2) AT2G16510 100.0 7.6e-71 263.5
Cec11g1625 . 58 179 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cec08g1496 . 2086 2207 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cec08g1497 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cec08g1339 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cec05g1886 . 4 161 Primary Pumps ATPases(2) AT2G25610 76.6 5.3e-54 208.0
Cec08g1497 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cec11g1625 . 85 222 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cec08g1496 . 2113 2244 Primary Pumps ATPases(2) AT4G38920 100.0 6.9e-57 216.9
Cec08g1339 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cec05g1886 . 11 161 Primary Pumps ATPases(2) AT4G32530 71.3 4.0e-56 214.9
Cec03g0176 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1667.1
Cec03g0176 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.1 0.0e+00 1667.5
Cec08g1722 . 1 1030 Primary Pumps ATPases(2) AT1G10130 80.0 0.0e+00 1600.9
Cec03g0176 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1317.8
Cec02g0413 . 6 488 Primary Pumps ATPases(2) AT1G76030 95.9 1.3e-267 918.7
Cec01g0821 . 223 598 Primary Pumps ATPases(2) AT1G12840 83.5 1.1e-181 632.9
Cec09g2323 . 992 1252 Primary Pumps ATPases(2) AT3G58730 82.4 5.9e-118 420.6
Cec10g1657 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.2 7.5e-206 713.4
Cec08g1497 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec11g1625 . 60 222 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec08g1496 . 2088 2244 Primary Pumps ATPases(2) AT2G16510 100.0 7.6e-71 263.5
Cec02g0413 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 8.2e-270 926.0
Cec05g1560 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.5 1.9e-65 245.7
Cec02g0413 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.6 2.7e-265 911.0
Cec02g2193 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.9
Cec08g1506 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.8 4.8e-299 1023.8
Cec02g0507 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 4.3e-292 1000.7
Cec10g1502 . 100 441 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Cec05g1560 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 1.2e-90 329.7
Cec09g0167 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1170.2
Cec02g0413 . 6 488 Primary Pumps ATPases(2) AT1G76030 95.9 1.3e-267 918.7
Cec02g0413 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 8.2e-270 926.0
Cec02g0413 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.6 2.7e-265 911.0
Cec01g0821 . 223 598 Primary Pumps ATPases(2) AT1G12840 83.5 1.1e-181 632.9
Cec09g2323 . 992 1252 Primary Pumps ATPases(2) AT3G58730 82.4 5.9e-118 420.6
Cec05g1560 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.0 1.2e-90 329.7
Cec05g1560 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 6.6e-76 280.8
Cec05g1560 . 1 182 Primary Pumps ATPases(2) AT1G64200 73.5 1.9e-65 245.7
Cec10g1657 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.2 7.5e-206 713.4
Cec02g2193 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.9
Cec08g1506 . 1 802 Primary Pumps ATPases(2) AT2G28520 63.8 4.8e-299 1023.8
Cec02g0507 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 4.3e-292 1000.7
Cec02g0507 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1232.6
Cec08g1506 . 1 807 Primary Pumps ATPases(2) AT2G21410 73.3 0.0e+00 1189.1
Cec02g2193 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.5 1.1e-298 1022.7
Cec02g0507 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.8 0.0e+00 1233.0
Cec08g1506 . 1 807 Primary Pumps ATPases(2) AT4G39080 73.8 0.0e+00 1185.2
Cec02g2193 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.4 1.2e-297 1019.2
Cec08g1497 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cec11g1625 . 85 222 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cec08g1496 . 2113 2244 Primary Pumps ATPases(2) AT4G34720 100.0 2.4e-57 218.4
Cec11g1625 . 58 179 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cec08g1496 . 2086 2207 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cec08g1497 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cec08g1497 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cec11g1625 . 85 222 Primary Pumps ATPases(2) AT4G38920 99.3 3.9e-60 227.6
Cec08g1496 . 2113 2244 Primary Pumps ATPases(2) AT4G38920 100.0 6.9e-57 216.9
Cec08g1497 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cec11g1625 . 59 222 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Cec08g1496 . 2087 2244 Primary Pumps ATPases(2) AT1G75630 80.7 2.5e-63 238.8
Cec08g1497 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec11g1625 . 60 222 Primary Pumps ATPases(2) AT2G16510 99.4 4.3e-74 274.2
Cec08g1496 . 2088 2244 Primary Pumps ATPases(2) AT2G16510 100.0 7.6e-71 263.5
Cec08g1339 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cec05g1886 . 11 161 Primary Pumps ATPases(2) AT4G32530 71.3 4.0e-56 214.9
Cec08g1339 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cec05g1886 . 4 161 Primary Pumps ATPases(2) AT2G25610 76.6 5.3e-54 208.0
Cec10g1502 . 100 441 Primary Pumps ATPases(2) AT3G28710 95.0 2.3e-194 674.9
Cec10g1502 . 100 441 Primary Pumps ATPases(2) AT3G28715 92.7 2.7e-187 651.4
Cec03g0176 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1667.1
Cec03g0176 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1317.8
Cec08g1722 . 1 1030 Primary Pumps ATPases(2) AT1G10130 80.0 0.0e+00 1600.9
Cec03g0176 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.1 0.0e+00 1667.5
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37