Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0343 ATGATTTGTGACAAGAAAGCGATTATACCTCGCCAATCTTCCTATAACTCTCTGTATTTGAATCCACTTACTGACCTCCGGCACAACCGTAGCTGCAGCGACGGCGGCGGATTCCGGCAAGGTAAAGAAAACTTAATTCCTAATACGAAGGATAAACAGAGAGATGAAAATGCAGTGTTTTGCGACAAAGAAAATGCGATTCCCATTAATGGGTTTTGTGCTAATTCAAAGCAGCAATTTGGGGATTTGAAGTCATTTTCGACTGGAAAGGCTTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAACGAACCCGATAAGGTTTTTGCCTCTAGATTGTGGGATGCCACTGATTCTGAACATTCAAGTTCTTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCCACTTTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGAGCCTTCTATTCTCTATACACCAATGAAGGGAAGGGGCGGCAGGATCGGAAGTTGGCGGTGGCTCGCCATCGACGACGGAACGGGAGGTCAGAGTATAAAATAGCTCAGAGTACAAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACCACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCATCTGAAACCAATCCCGAGCAAGTCAAGATCGCTTCTGGCTGCTGTAACATTCATGCCTACAATGACTACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCTGCTAAAGAACACCAATCAGGTGCAACACATAGCAGGGCTGCCAAAGGAGTGGGAGGAAGAAAAGGCCAAAGTCCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAATTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGTAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTATCAAGCATTTTGCATATGTCTGGCTTCCATAGATTCAAAGCTGTGTTGCTCAGTATGA 1221 44.14 MICDKKAIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLIPNTKDKQRDENAVFCDKENAIPINGFCANSKQQFGDLKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDATDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGSHLKPIPSKSRSLLAAVTFMPTMTTWTGSHRSMKAFIPKHQSMLLKNTNQVQHIAGLPKEWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2887042 2890056 + CePI673135_09g003430.1 Cec09g0343 210853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0343 406 Gene3D Tubby Protein; Chain A 144 405 IPR025659 -
Cec09g0343 406 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cec09g0343 406 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Cec09g0343 406 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Cec09g0343 406 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Cec09g0343 406 Pfam Tub family 151 400 IPR000007 -
Cec09g0343 406 SUPERFAMILY Tubby C-terminal domain-like 139 404 IPR025659 -
Cec09g0343 406 MobiDBLite consensus disorder prediction 32 51 - -
Cec09g0343 406 PANTHER TUBBY-RELATED 126 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0729 Cec-Chr8:19023887 Cec09g0343 Cec-Chr9:2887042 1.80E-10 dispersed
Cec09g0343 Cec-Chr9:2887042 Cec05g2076 Cec-Chr5:32637920 4.00E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30171 PF01167 Tub 3.50E-45 CL0395 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0343 K19600 - csv:101216780 781.941