Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0344 ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCTCCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCAGCTTACGACAAAGCGGCCATAGAATACCGCGGCCTTAACGCCGTTACAAATTTCGACCACAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGGATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGACGAAACTACGTCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCAGTCGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCCATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTCGATGCTTAA 1089 49.49 MAKISHPSHNNSISSTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDHSRYIKCLRPGEQDIPNNNNRPPNPNADETTSEFDPNSLLGFTFQSQCSSSGQPATEPLPEPGDGDSSSSSAALELLLHSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2893611 2900052 - CePI673135_09g003440.1 Cec09g0344 210854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0344 362 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 232 - -
Cec09g0344 362 Pfam AP2 domain 151 202 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 Pfam AP2 domain 49 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 Gene3D AP2/ERF domain 151 211 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 SMART rav1_2 50 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 SMART rav1_2 152 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 MobiDBLite consensus disorder prediction 223 266 - -
Cec09g0344 362 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677(InterPro)
Cec09g0344 362 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 MobiDBLite consensus disorder prediction 1 51 - -
Cec09g0344 362 FunFam AP2-like ethylene-responsive transcription factor 151 212 - -
Cec09g0344 362 CDD AP2 151 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 FunFam AP2-like ethylene-responsive transcription factor 49 118 - -
Cec09g0344 362 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0344 362 MobiDBLite consensus disorder prediction 220 281 - -
Cec09g0344 362 MobiDBLite consensus disorder prediction 1 25 - -
Cec09g0344 362 SUPERFAMILY DNA-binding domain 49 117 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g1453 Cec-Chr6:28022843 Cec09g0344 Cec-Chr9:2893611 4.60E-113 dispersed
Cec08g0914 Cec-Chr8:20976427 Cec09g0344 Cec-Chr9:2893611 4.50E-60 dispersed
Cec09g0344 Cec-Chr9:2893611 Cec10g1500 Cec-Chr10:29363872 6.20E-73 dispersed
Cec09g0344 Cec-Chr9:2893611 Cec05g2427 Cec-Chr5:35504013 3.90E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30172 PF00847 AP2 2.40E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0344 K09285 - csv:101206499 610.142