Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec09g0344 | ATGGCGAAGATCTCACATCCTTCGCACAACAATTCCATTTCCTCCACTGCTAATCCTCATTCTTCTCCAATTCGTCACAGCCAGAAGAAGGTACTGAAGCGCACGCGTAAGTCCGCTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACTAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATAGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTCAACTTTCCAATATTAACGTACCGAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGTGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAATAAATACCTTTACCTTGGAACATATGCTACCCAAGAAGAAGCTGCCGCAGCTTACGACAAAGCGGCCATAGAATACCGCGGCCTTAACGCCGTTACAAATTTCGACCACAGCCGTTACATCAAATGCCTCCGTCCTGGGGAACAGGATATCCCCAACAATAATAACCGTCCGCCAAACCCTAACGCCGACGAAACTACGTCAGAATTTGACCCCAATTCCCTCCTCGGATTCACCTTTCAGTCGCAATGTTCGAGCTCCGGCCAACCTGCCACCGAGCCACTGCCGGAACCTGGCGACGGTGACTCCTCCTCATCGTCCGCGGCGCTGGAGCTCCTACTCCATTCCTCAAAATTTAAAGACATAATAGAAAGAACATCCGCCGCCGAGGCTCCACAGACGCCGCCGGAATCTGACCGGCCGCGCCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATCCCGGCGACATTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCAGTTTTTCACTGCGAACTCGATGCTTAA | 1089 | 49.49 | MAKISHPSHNNSISSTANPHSSPIRHSQKKVLKRTRKSAPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNSWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPILTYRDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDKAAIEYRGLNAVTNFDHSRYIKCLRPGEQDIPNNNNRPPNPNADETTSEFDPNSLLGFTFQSQCSSSGQPATEPLPEPGDGDSSSSSAALELLLHSSKFKDIIERTSAAEAPQTPPESDRPRRCIPDDIQTYFDCTQDPGDIAEGDDSIFGYLNSFLPSSVFHCELDA | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2893611 | 2900052 | - | CePI673135_09g003440.1 | Cec09g0344 | 210854 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec09g0344 | 362 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 36 | 232 | - | - | |
Cec09g0344 | 362 | Pfam | AP2 domain | 151 | 202 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | Pfam | AP2 domain | 49 | 108 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | Gene3D | AP2/ERF domain | 50 | 118 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | Gene3D | AP2/ERF domain | 151 | 211 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | SMART | rav1_2 | 50 | 122 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | SMART | rav1_2 | 152 | 216 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | MobiDBLite | consensus disorder prediction | 223 | 266 | - | - | |
Cec09g0344 | 362 | SUPERFAMILY | DNA-binding domain | 151 | 212 | IPR016177 | GO:0003677(InterPro) | |
Cec09g0344 | 362 | ProSiteProfiles | AP2/ERF domain profile. | 152 | 210 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cec09g0344 | 362 | FunFam | AP2-like ethylene-responsive transcription factor | 151 | 212 | - | - | |
Cec09g0344 | 362 | CDD | AP2 | 151 | 212 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | FunFam | AP2-like ethylene-responsive transcription factor | 49 | 118 | - | - | |
Cec09g0344 | 362 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | PRINTS | Ethylene responsive element binding protein signature | 192 | 212 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec09g0344 | 362 | MobiDBLite | consensus disorder prediction | 220 | 281 | - | - | |
Cec09g0344 | 362 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cec09g0344 | 362 | SUPERFAMILY | DNA-binding domain | 49 | 117 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec06g1453 | Cec-Chr6:28022843 | Cec09g0344 | Cec-Chr9:2893611 | 4.60E-113 | dispersed | |
Cec08g0914 | Cec-Chr8:20976427 | Cec09g0344 | Cec-Chr9:2893611 | 4.50E-60 | dispersed | |
Cec09g0344 | Cec-Chr9:2893611 | Cec10g1500 | Cec-Chr10:29363872 | 6.20E-73 | dispersed | |
Cec09g0344 | Cec-Chr9:2893611 | Cec05g2427 | Cec-Chr5:35504013 | 3.90E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30172 | PF00847 | AP2 | 2.40E-13 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec09g0344 | K09285 | - | csv:101206499 | 610.142 |