Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0378 ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCCAAGCCCTTCCGCTTCGTCGAGAAGCAACCGCAAGAACCGCCGCCACAGCGAGTTCTTTCCCGGCCAGATTTAGGGTTCTGTGTCGACTTGTCGATTGGCCGTCCGGTTGTCGGAGAGAAAGAGGACGACGAAGAAAAACCTAATCAGAGAGAAGATGAATCCGACGCTAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCATAATCCTGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGACCGAACCGCATCTCCGAACAGCGCAGCGTCGTCGTTTCAGATGGAATTTGGACTGTACGGCGGCGGAGGAAATATTTCCTGCCGGAGAGATCAAATTGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGGAAGAGCGTCTTCTAGAGCTAGCGATGAAGACGAAAATGGCTGTACGAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTCCTTGAAGAAAGCTTCAAAGAACACAACACTTTAAACCCTAAACAGAAGCTAGCACTGGCTAAGCAACTGAATCTTCTTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGGGCTAGGACGAAATTGAAGCAAACGGAAGTGGATTGCGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAACAGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACAACGAACTCATTCTACATGCAATTACCAGCCACCACACTCACCATGTGTCCTTCTTGTGAAAGAGTAACCTCAACTTCCGCCGCTTCCACCGTCGCTGCCGTCGCCACCAGTGGAGGCAAATCGACGGAGGGAGTTTCAAAACGTTCTGGGTTCGCCATTGCTGGCCGACCCAGTTCTTCCTCTTTCCCATTTTCTGCTAAAACGCAGTCCCACCAGTCAACAGCTTCATGA 1002 49.0 MELGLSLGDAPKPFRFVEKQPQEPPPQRVLSRPDLGFCVDLSIGRPVVGEKEDDEEKPNQREDESDANEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCRRDQIENGVMNEVGESGRASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTSAASTVAAVATSGGKSTEGVSKRSGFAIAGRPSSSSFPFSAKTQSHQSTAS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3241315 3242561 + CePI673135_09g003780.1 Cec09g0378 210888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0378 333 SMART halz 222 265 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g0378 333 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677(InterPro)
Cec09g0378 333 Gene3D - 170 220 - -
Cec09g0378 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 56 290 IPR050762 -
Cec09g0378 333 MobiDBLite consensus disorder prediction 292 333 - -
Cec09g0378 333 CDD homeodomain 166 223 IPR001356 GO:0003677(InterPro)
Cec09g0378 333 SUPERFAMILY Homeodomain-like 159 223 IPR009057 -
Cec09g0378 333 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g0378 333 MobiDBLite consensus disorder prediction 146 165 - -
Cec09g0378 333 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec09g0378 333 SMART HOX_1 164 226 IPR001356 GO:0003677(InterPro)
Cec09g0378 333 MobiDBLite consensus disorder prediction 46 68 - -
Cec09g0378 333 MobiDBLite consensus disorder prediction 1 113 - -
Cec09g0378 333 MobiDBLite consensus disorder prediction 310 333 - -
Cec09g0378 333 FunFam Homeobox-leucine zipper protein HAT22 170 216 - -
Cec09g0378 333 Coils Coil 228 258 - -
Cec09g0378 333 Pfam Homeodomain 166 220 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0378 Cec-Chr9:3241315 Cec10g1968 Cec-Chr10:34472096 6.60E-13 dispersed
Cec01g0608 Cec-Chr1:6506797 Cec09g0378 Cec-Chr9:3241315 1.80E-35 transposed
Cec04g1485 Cec-Chr4:34408287 Cec09g0378 Cec-Chr9:3241315 1.00E-53 transposed
Cec05g0047 Cec-Chr5:542726 Cec09g0378 Cec-Chr9:3241315 2.80E-47 transposed
Cec05g1944 Cec-Chr5:31498779 Cec09g0378 Cec-Chr9:3241315 2.00E-41 transposed
Cec06g1591 Cec-Chr6:29489667 Cec09g0378 Cec-Chr9:3241315 4.70E-41 transposed
Cec07g0721 Cec-Chr7:13812448 Cec09g0378 Cec-Chr9:3241315 1.00E-34 transposed
Cec10g0249 Cec-Chr10:2766106 Cec09g0378 Cec-Chr9:3241315 1.30E-51 transposed
Cec10g0842 Cec-Chr10:16896854 Cec09g0378 Cec-Chr9:3241315 3.00E-51 transposed
Cec10g1276 Cec-Chr10:26893655 Cec09g0378 Cec-Chr9:3241315 1.70E-46 transposed
Cec10g1777 Cec-Chr10:32503119 Cec09g0378 Cec-Chr9:3241315 9.40E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30174 PF00046 Homeodomain 4.90E-15 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0378 K09338 - csv:101221600 577.4