Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0401 ATGGCGAAGACTAGGGCTCATGAGCTATCGCGAGCGTTAGCAGGTGATACATGCACAATTCGGCTGACTGAAATTTTCGGGAGGGCGACCAAGTCTATTTTGGGCTTCTTTATCATGGTGGGTCTTTGCAATGGCGTGCATTACCTTTTGAGGCCATTTTCTCAACCTCGCATTACCTCTGATACGATCGTAGGTTTGGCTGTTGGCAACTTCATAAGGAAGGAACTTGATATATCAACGATTAAAACGCTGCGTTATATCGTCGACTTTGGTATGATATGCTATATGTTTGTGCTGGGATTGGAGGTGGATCCATATGTACTCTTCAAAGCACCTACACGTGATGCTAAGGTAGCTTATGCTGGAATGATTTCGACACTCATCTTAGCCTGTTCCATAATCCCATTTATTAGCTTTGCAAAGTCAAAAGAGATCAGTTTCATAATCTCCCTCTCAACTGTCCTCTCTAGCACTGCTTCTCCTGTACTAACCCGTTTGATTACCAGTCTTAAAATCGGTAGGTCAGATATAGGCCGGCTCGTCATTGCTGCCGGAATGCATTCTGATTTTATATCCACTCTCATGATCTGTATTGGTTATCTCTTTTGCAAATGCCAAGAGACACGCATCTCCCTTATAAAAGGTTTTCAATTAGGTATTCTATTATTGATCCAGTCAGTACTGACAGCGAAGGTTTCACCAGTATTCATGAACTGGGTAAATAATGAAAACCCCGAGGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCGGTTGCCCTACTGTATTTGGTTACAATCCGATTCTCAGTGCATTTTTAGCTGGAACATTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACCGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTGAGTGACTTTGAACCTGGACAAATAATGACATGGATTAGGTTAATTCTGCTTTTTGCTATTGTAACCGTAGGAAAAGTTTTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTGGCTATTGCTGCAAAAACAGCTGGAAAGATAACTACATCTACGAGCTTGGTGATGGTAATTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCACATATAATCAAGAGGGCAAGGAAACGCACACCTACACATCGAATGGCTCTCCAATTGCTTGATCCATCAAGTGAGCTTAAGATCTTGTTATGTATACATGGACCTCAGAACACTGCAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACAGCTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCATCCACATTAGTTCAAGGTGAAGGAGTGGACACCGTGACTGTAACCCACACAGGAGTGACACAAATGAGAGACCAAGTTACTTCTGCAGTTCAGAGCTATGTAGATGAAAATGGAGAAGGGATTACTCTTAGGAGAATGTTAGCTCTCTCAACATTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTCCACAAGAGCCAGCGTGGAGATGGGTCGTTGAGTGAGGGCCAAGCAGCTTTCCGCTATGTAAACCGCAAGGTTCTCAGGCATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTGGAGAAAACTTCGAGGTCGTATGTATCTCAAAGTGTGGCAGTCATCTTCATTGGCGGTAAAGATGACCGAGAAGCATTAGCCTATGCCGGTCGAGTAGCAAGGCATCCCGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACTTACAGGATAAGTGTTGCTGAGCAGGAAGAGGAAATGAGACAAGACGATGAATGCTTTGCCTATTTTTACGAAAGGCATGTGGCTGGTGGGCACGTTGCGTACGTTGAAAAACACCTGGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCACTGGAAGGGCAATACGCCCTCATAATCGTAGGTCGAGGTGGGAAGGTCAACTCGGTGTTAACTTTTGGGATGAATGACTGGCAACAGTGTCCAGAACTGGGTCCTATAGGGGACATTCTTTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCATCAACACAATCTAAAAGGAGAACTAGATGGACTTGATGATGACTTTTCAATTATGTAG 2373 43.91 MAKTRAHELSRALAGDTCTIRLTEIFGRATKSILGFFIMVGLCNGVHYLLRPFSQPRITSDTIVGLAVGNFIRKELDISTIKTLRYIVDFGMICYMFVLGLEVDPYVLFKAPTRDAKVAYAGMISTLILACSIIPFISFAKSKEISFIISLSTVLSSTASPVLTRLITSLKIGRSDIGRLVIAAGMHSDFISTLMICIGYLFCKCQETRISLIKGFQLGILLLIQSVLTAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCGCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLSDFEPGQIMTWIRLILLFAIVTVGKVFGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAKTAGKITTSTSLVMVIVIFFTVVHAPKVVAHIIKRARKRTPTHRMALQLLDPSSELKILLCIHGPQNTAAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDTVTVTHTGVTQMRDQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIILPFHKSQRGDGSLSEGQAAFRYVNRKVLRHAPCSVGILVDRGLGSVEKTSRSYVSQSVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNSVLTFGMNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3457239 3460991 + CePI673135_09g004010.1 Cec09g0401 210911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0401 790 Gene3D - 29 429 IPR038770 -
Cec09g0401 790 FunFam Cation/H(+) antiporter 28 30 429 - -
Cec09g0401 790 Gene3D - 443 743 - -
Cec09g0401 790 PANTHER CATION/H + ANTIPORTER 37 775 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cec09g0401 790 Pfam Sodium/hydrogen exchanger family 49 419 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0401 K26731 - - csv:101211645 1475.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0401 Cec-Chr9:3457239 Cec09g1265 Cec-Chr9:14446742 5.80E-84 dispersed
Cec09g0401 Cec-Chr9:3457239 Cec07g0535 Cec-Chr7:6372168 1.10E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1119 Blo06g00594 . . . . Bpe10g00541 . . . . . . . . Sed09g1353 . . Bhi09g00656 Tan06g0598 Cmetu01g0797 . . . . . . . . . . . . Cone20ag1063 . . Lsi02g02561 . . . . . . . . . . . . . . Cma08g00518 . Car08g00430 . . . . . . . . . . Cla09g00367 Cam09g0397 Cec09g0401 Cco09g0384 Clacu09g0400 . Cre09g0382 . . Chy01g01852 Cme01g02457
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec02g0059 . 4 808 Antiporter Super Family AT2G13620 71.7 0.0e+00 1154.0
Cec04g0974 . 77 847 Antiporter Super Family AT3G53720 68.9 1.6e-288 988.8
Cec07g0839 . 7 774 Antiporter Super Family AT5G41610 68.1 6.2e-299 1023.5
Cec07g0837 . 69 853 Antiporter Super Family AT5G41610 66.5 1.6e-294 1008.8
Cec07g0842 . 29 771 Antiporter Super Family AT5G41610 68.4 1.7e-288 988.8
Cec07g0834 . 169 947 Antiporter Super Family AT5G41610 65.0 2.4e-287 984.9
Cec04g0974 . 9 821 Antiporter Super Family AT5G41610 50.5 1.9e-207 719.5
Cec07g0839 . 11 791 Antiporter Super Family AT4G23700 65.4 3.1e-290 994.6
Cec07g0837 . 78 870 Antiporter Super Family AT4G23700 64.0 9.7e-284 973.0
Cec07g0834 . 179 945 Antiporter Super Family AT4G23700 63.5 4.2e-279 957.6
Cec07g0842 . 29 770 Antiporter Super Family AT4G23700 61.6 2.6e-260 895.2
Cec07g0837 . 77 851 Antiporter Super Family AT3G17630 62.5 1.9e-268 922.2
Cec07g0839 . 7 791 Antiporter Super Family AT3G17630 61.4 4.3e-268 921.0
Cec07g0834 . 175 945 Antiporter Super Family AT3G17630 61.2 8.6e-261 896.7
Cec07g0842 . 29 753 Antiporter Super Family AT3G17630 63.6 5.4e-255 877.5
Cec04g0974 . 9 823 Antiporter Super Family AT3G17630 51.3 1.0e-205 713.8
Cec07g0839 . 1 775 Antiporter Super Family AT1G64170 58.0 1.3e-240 829.7
Cec07g0837 . 79 853 Antiporter Super Family AT1G64170 57.6 1.5e-239 826.2
Cec07g0834 . 180 947 Antiporter Super Family AT1G64170 56.8 8.0e-230 793.9
Cec07g0842 . 29 756 Antiporter Super Family AT1G64170 55.4 1.8e-213 739.6
Cec02g0059 . 4 808 Antiporter Super Family AT2G13620 71.7 0.0e+00 1154.0
Cec07g0839 . 1 775 Antiporter Super Family AT1G64170 58.0 1.3e-240 829.7
Cec07g0837 . 79 853 Antiporter Super Family AT1G64170 57.6 1.5e-239 826.2
Cec07g0834 . 180 947 Antiporter Super Family AT1G64170 56.8 8.0e-230 793.9
Cec07g0842 . 29 756 Antiporter Super Family AT1G64170 55.4 1.8e-213 739.6
Cec07g0839 . 11 791 Antiporter Super Family AT4G23700 65.4 3.1e-290 994.6
Cec07g0837 . 78 870 Antiporter Super Family AT4G23700 64.0 9.7e-284 973.0
Cec07g0834 . 179 945 Antiporter Super Family AT4G23700 63.5 4.2e-279 957.6
Cec07g0842 . 29 770 Antiporter Super Family AT4G23700 61.6 2.6e-260 895.2
Cec07g0839 . 7 774 Antiporter Super Family AT5G41610 68.1 6.2e-299 1023.5
Cec07g0837 . 69 853 Antiporter Super Family AT5G41610 66.5 1.6e-294 1008.8
Cec07g0842 . 29 771 Antiporter Super Family AT5G41610 68.4 1.7e-288 988.8
Cec07g0834 . 169 947 Antiporter Super Family AT5G41610 65.0 2.4e-287 984.9
Cec04g0974 . 9 821 Antiporter Super Family AT5G41610 50.5 1.9e-207 719.5
Cec07g0837 . 77 851 Antiporter Super Family AT3G17630 62.5 1.9e-268 922.2
Cec07g0839 . 7 791 Antiporter Super Family AT3G17630 61.4 4.3e-268 921.0
Cec07g0834 . 175 945 Antiporter Super Family AT3G17630 61.2 8.6e-261 896.7
Cec07g0842 . 29 753 Antiporter Super Family AT3G17630 63.6 5.4e-255 877.5
Cec04g0974 . 9 823 Antiporter Super Family AT3G17630 51.3 1.0e-205 713.8
Cec04g0974 . 77 847 Antiporter Super Family AT3G53720 68.9 1.6e-288 988.8
Cec09g0401 . 47 790 Antiporter Super Family AT3G52080 54.3 1.2e-233 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34