Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0419 ATGACAGACCCAAATTACTCAAATTCCTTCAACTTCATCCCTCTTCCTTCTTATCTTCCTCCTTCAAATTTCCCCTTTTCCCAATACCGCCACCCTCTTCCTCCTCCTCCTCCTCCGCCGTCTTCGCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTTTGGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTTGCAGTTTCGATGACGAATCTGCCGCTCTTGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTCCTCTCATTCCTTCTCGCCGGACCCTGGCACCGGGAAAATCCTCGACGGTGACATATCCGACCACCCTTTGCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCCACCCCATCTCAGATCCTCATCGGCCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCGCAATACAGGAAAGGCCCAGAATCACTCAAAGGAACACAACCAACCGCAATGCTAAGGCTCCCATGCTATTGCTGCGCGGCTGGCTGCAAACACAACATCGACAACCCACGGTCGCGGCCGCTCAAGGATTTCCGCACCCTTCAAACGCATTACAAGCGCAAGCACGGCATCAAGCCCTTCACTTGTAGAAAATGCACCAAAGCCTTCGCTGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGCGGCAAGATTTGGTATTGCTTTTGTGGTTCTGACTTCAAACACAAACGCTCCCTTAAAGACCATATCAAGGCCTTTGGTCACGGCCATGGCGCCCTCGGTCTTGACTACTTTGATGACGACAATGAACCCTCTCCTGAACTCCAACTCCAACACCAATCACAACACGGCCTCTTCCTCCATCTTCATTAA 924 52.38 MTDPNYSNSFNFIPLPSYLPPSNFPFSQYRHPLPPPPPPPSSPPQALPLLNTLWPETADHPSSSTTTCSFDDESAALALDFSLSCPSSDLDSSSHSFSPDPGTGKILDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAAGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGHGHGALGLDYFDDDNEPSPELQLQHQSQHGLFLHLH 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3626026 3629174 + CePI673135_09g004190.1 Cec09g0419 210929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0419 307 Gene3D Classic Zinc Finger 182 272 - -
Cec09g0419 307 MobiDBLite consensus disorder prediction 26 49 - -
Cec09g0419 307 PANTHER ZINC FINGER PROTEIN WIP2 120 297 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cec09g0419 307 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 222 246 - -
Cec09g0419 307 MobiDBLite consensus disorder prediction 27 46 - -
Cec09g0419 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 166 IPR013087 -
Cec09g0419 307 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Cec09g0419 307 Gene3D Classic Zinc Finger 138 161 - -
Cec09g0419 307 FunFam Zinc finger protein WIP2 192 274 - -
Cec09g0419 307 SMART c2h2final6 223 243 IPR013087 -
Cec09g0419 307 SMART c2h2final6 139 161 IPR013087 -
Cec09g0419 307 SMART c2h2final6 249 272 IPR013087 -
Cec09g0419 307 SUPERFAMILY beta-beta-alpha zinc fingers 206 243 IPR036236 -
Cec09g0419 307 SUPERFAMILY beta-beta-alpha zinc fingers 132 161 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0419 Cec-Chr9:3626026 Cec10g1741 Cec-Chr10:32086938 7.50E-88 dispersed
Cec02g2442 Cec-Chr2:41628104 Cec09g0419 Cec-Chr9:3626026 4.30E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30178 PF00096 zf-C2H2 0.0016 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0419 - - - 0.0