Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0536 ATGGCGACGAGGAATCGAACTGCACAGTTTAAAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCACCTTTATCTTCTTCGGCAGCTGGTTCGAGCGGGCCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGTTCTTCTTCGTATGCTCCTCTTAGCACTGAAGATCCAGGACCTTCGAGTGATGCATTTATGGTGGGTCTACCTCCAGCATGGGTGGATGATTCTGAAGAAATAACTGTTAATATACAGAAAATTCGTAGGAAAATGGCAGAATTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATGAGCATACGATTGAGGCACTTACACTAGAGATTACCAATCTTTTGAAAACTTCCGAGAAGAGGTTGAAGAAAATTTCTAGTAATGGGTCCTCAGAGGATATTATCATCAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCGATGGACCTTCGTAGAAGACAGTCAATGTATCTGAAACGTCTGCAGCAGCAAAAGGAGGGACACGATGGAATTGATTTGGAGATAAATTTGAATGGAAACAGAACTCTTCAGGAGGATGATGGATATGATGAATTTGGAGCCAATGAAAACCAAACGATGACATTAGATGGGCATCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAATCGGTAAATGAGCTCGCCCAAATTATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGCTTCAGTTGAAGAGGGCTTTAAACAGCTTCAGAAGGCAGAGAACAGTCAGAAGGATGGAGGAATGGTGAAATGTGCAACAGTGCTTGTTATTATGTGTTTCATAATGTTGGTTCTGTTGATACTGAAGGAGATAATTATGTAA 960 41.98 MATRNRTAQFKRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSDAFMVGLPPAWVDDSEEITVNIQKIRRKMAELVKAHSKALMPSFADGKEDEHTIEALTLEITNLLKTSEKRLKKISSNGSSEDIIIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNRTLQEDDGYDEFGANENQTMTLDGHHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGFKQLQKAENSQKDGGMVKCATVLVIMCFIMLVLLILKEIIM 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4613302 4617136 - CePI673135_09g005360.1 Cec09g0536 211046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0536 319 Gene3D - 72 277 - -
Cec09g0536 319 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 223 285 IPR000727 -
Cec09g0536 319 MobiDBLite consensus disorder prediction 1 33 - -
Cec09g0536 319 SMART tSNARE_6 215 285 IPR000727 -
Cec09g0536 319 SMART SynN_4 66 181 IPR006011 GO:0016020(InterPro)
Cec09g0536 319 ProSitePatterns Syntaxin / epimorphin family signature. 229 268 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cec09g0536 319 Pfam SNARE domain 259 311 IPR000727 -
Cec09g0536 319 CDD SNARE_syntaxin16 226 284 - -
Cec09g0536 319 FunFam Syntaxin-43 72 277 - -
Cec09g0536 319 PANTHER SYNTAXIN 82 305 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cec09g0536 319 SUPERFAMILY t-snare proteins 71 278 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1601 Cec-Chr2:33562431 Cec09g0536 Cec-Chr9:4613302 1.70E-102 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0536 K08489 - csv:101204192 570.081