Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0592 ATGGATGAAAACACAGGAATGTCAGAGAGATTAGTAGAATTTAAGTACGATTTCAGCGGCGGTGGTGGTGTCGGTGGTAGCACCGGTGGTTCGAGTGAGGAAGCTGGTAACGGCGTTGGCGGGGTCGTAAAAGAGCAAGATCGGTTACTTCCAATAGCAAATGTGGGGAGGATCATGAAGCAAATTCTACCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAGTGCGTGTCGGAGTTCATCAGTTTCGTGACAGGCGAGGCGTCGGATAAGTGCCATAAAGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCTTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGATATGGAGGGGGAGAGAGCTCAACAAAACAAGGGATGTTGCAATAATAATTCTAACAATAATAATCATGATGCATGA 477 44.23 MDENTGMSERLVEFKYDFSGGGGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNSNNNNHDA 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5127052 5127528 - CePI673135_09g005920.1 Cec09g0592 211102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0592 158 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 40 148 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cec09g0592 158 FunFam Nuclear transcription factor Y subunit B-3 40 158 - -
Cec09g0592 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 49 113 IPR003958 -
Cec09g0592 158 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cec09g0592 158 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Cec09g0592 158 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Cec09g0592 158 SUPERFAMILY Histone-fold 46 154 IPR009072 GO:0046982(InterPro)
Cec09g0592 158 ProSitePatterns NF-YB/HAP3 subunit signature. 80 96 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g0592 158 Gene3D Histone, subunit A 41 158 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1762 Cec-Chr3:35920762 Cec09g0592 Cec-Chr9:5127052 1.40E-30 dispersed
Cec06g1711 Cec-Chr6:30679842 Cec09g0592 Cec-Chr9:5127052 5.20E-12 dispersed
Cec09g0592 Cec-Chr9:5127052 Cec10g0423 Cec-Chr10:5109684 3.30E-39 dispersed
Cec09g0592 Cec-Chr9:5127052 Cec02g1461 Cec-Chr2:32002614 5.00E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30190 PF00808 CBFD_NFYB_HMF 6.70E-27 CL0012 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0592 K08065 - csv:101204763 275.018