Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0710 ATGTTTGCTTCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTCTCTTCTACCACAAGAGTCCACCCTGATTTCACCTGCTTAAACCCTCTCCTTCCATCTTTTTCTGATGTTCACCACCCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCGGATGCGGAAGTGATAGCGCTTTCGCCAAAAACACTACTGGCAACAAATAGATTTGTGTGTGAGATTTGCAACAAGGGTTTCCAAAGGGATCAAAATTTGCAGTTGCATAGGAGAGGGCACAATTTACCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGCTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCATTGGCTGAAGAAAGTGCAAGGCTCTCAGCTAACCAATTGGCCATGGCTGCCGCCGCGGCCGCTGCCTCGGGTGCCACTGATATCAACATAAACTCATCTTCAACCACCGCCGCCGACCAGTCGCTCTTTCCTTATGGTAATCACCATCAATTCTCGAACTCGACACTATCACTACCACCACCTCCACCTCTGTCTCAAACCCACATATCTTTAAACCCTTGGGATCATCCCCAAAACCCTAACCCTAATCACACCCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATTCTTCCCATTCTCATAATTTTCACCAAATTCCAAATTTGCCCCTCTCCAATTCCTCCTCTGCCAACAACAACCCTTTTGGTCTAATTCAAGACCACCACCACCAAAAGGTAGGCTCATCCTCCTCCTCTTCCATGATAACCTCACCCTTCAGGAACCTCCACGTGTCAGTGCACCCGGGATCAAATGTTGCCACGTCAGCTCACCTATCAGCAACTGCCCTACTCCAAAAGGCAGCGACAGTTGGCGTTGGCGCTGCAAAATCCGGTCACCATCAACCCGAGTCAGTAGGCCACATGACTCACTTCAACATGCAAAACATCCCCGAGTTCGGTCCACCGAATCACATTGAATCACTGAGTCAACTTGATCCTGACTATGCCACGTGGCAGAAGACTGACCGGCTGACCAGGGACTTTCTCGGTCTGACTGGAGATGGGAACAGTGGCGTTGGTAGTGGTGGTGGTTCTGGCGGCAGTGGAGTGGTGCAAGTTAGCATGAGCGTTAAGGATATGCTAACGTACGCAAGTGGATTGGAGATGTTTAAGCCTCACAACAATAGTAATAGTAGTAATAATAATTTTGGATATGCGGAGCCAGCTGCCAACGAAACTTGGGGAGATTGTTGA 1530 46.34 MFASTMSNSTSLSEEASVSSTTRVHPDFTCLNPLLPSFSDVHHPPQKLKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAAAAASGATDININSSSTTAADQSLFPYGNHHQFSNSTLSLPPPPPLSQTHISLNPWDHPQNPNPNHTLQIIKPEDSNSHSSHSHNFHQIPNLPLSNSSSANNNPFGLIQDHHHQKVGSSSSSSMITSPFRNLHVSVHPGSNVATSAHLSATALLQKAATVGVGAAKSGHHQPESVGHMTHFNMQNIPEFGPPNHIESLSQLDPDYATWQKTDRLTRDFLGLTGDGNSGVGSGGGSGGSGVVQVSMSVKDMLTYASGLEMFKPHNNSNSSNNNFGYAEPAANETWGDC 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6352375 6355606 + CePI673135_09g007100.1 Cec09g0710 211220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0710 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Cec09g0710 509 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 153 177 - -
Cec09g0710 509 FunFam protein indeterminate-domain 12-like 57 125 - -
Cec09g0710 509 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Cec09g0710 509 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Cec09g0710 509 MobiDBLite consensus disorder prediction 486 509 - -
Cec09g0710 509 MobiDBLite consensus disorder prediction 272 347 - -
Cec09g0710 509 Gene3D Classic Zinc Finger 57 126 - -
Cec09g0710 509 MobiDBLite consensus disorder prediction 41 62 - -
Cec09g0710 509 Gene3D Classic Zinc Finger 147 212 - -
Cec09g0710 509 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 449 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec09g0710 509 SMART c2h2final6 154 174 IPR013087 -
Cec09g0710 509 SMART c2h2final6 78 100 IPR013087 -
Cec09g0710 509 SMART c2h2final6 119 149 IPR013087 -
Cec09g0710 509 FunFam protein indeterminate-domain 5, chloroplastic-like 132 211 - -
Cec09g0710 509 Pfam Zinc finger, C2H2 type 78 100 IPR013087 -
Cec09g0710 509 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 115 149 - -
Cec09g0710 509 MobiDBLite consensus disorder prediction 256 347 - -
Cec09g0710 509 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 180 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1072 Cec-Chr2:20380393 Cec09g0710 Cec-Chr9:6352375 4.30E-89 dispersed
Cec04g1633 Cec-Chr4:35643273 Cec09g0710 Cec-Chr9:6352375 1.50E-88 dispersed
Cec05g1973 Cec-Chr5:31759727 Cec09g0710 Cec-Chr9:6352375 1.90E-86 dispersed
Cec08g1569 Cec-Chr8:27281530 Cec09g0710 Cec-Chr9:6352375 1.30E-80 dispersed
Cec09g0593 Cec-Chr9:5162250 Cec09g0710 Cec-Chr9:6352375 6.40E-81 dispersed
Cec09g0710 Cec-Chr9:6352375 Cec11g0084 Cec-Chr11:1068620 2.20E-84 dispersed
Cec09g0710 Cec-Chr9:6352375 Cec07g1494 Cec-Chr7:30546187 8.60E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30195 PF00096 zf-C2H2 0.0051 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0710 K25870 - csv:101208253 790.801