Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0747 ATGATGTCGTCGGATTCGAGTTCGAGTTCTTGTTCGTCTCCAGTGATGCAAGTTAAGGAGGAGATTGAGGAAGGGAGTTTTGGTGACGACATCGTTGTGCAGGAAGATGAATCACGTAAGGAGGATAGGGTTTATCGAGGGGTGCGGAGGAGGCCGTGGGGGAAGTACGCGGCTGAGATTAGGGATTCGACGCGACAAGGGGTGAGGGTGTGGTTGGGGACGTTTGATAGCGCCGAAGCGGCTGCGTTGGCGTATGACCAAGCCGCATTTTGCATGAGAGGAGGGTTAGCCACGCTTAACTTTCCGGTCGAGGTTGTACGAGAGTCACTCCGAGAGATGAAGTACCGGTGGGAGGCCGGGTGCTCGCCAGTCTTGGCGCTTAAGCGGCGCCACTCGATACGGAGGAAGAAGATGGCTGAAGTGGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAGCAAACTGTAGTTGTTTTTGAGGATTTGGGTGTAGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 525 51.81 MMSSDSSSSSCSSPVMQVKEEIEEGSFGDDIVVQEDESRKEDRVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPVEVVRESLREMKYRWEAGCSPVLALKRRHSIRRKKMAEVEKMEKKMKKKKQTVVVFEDLGVEYLEELLSLTS 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6822629 6823153 + CePI673135_09g007470.1 Cec09g0747 211257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0747 174 FunFam Ethylene-responsive transcription factor 2 43 104 - -
Cec09g0747 174 CDD AP2 45 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0747 174 Coils Coil 134 161 - -
Cec09g0747 174 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0747 174 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0747 174 ProSiteProfiles AP2/ERF domain profile. 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0747 174 SMART rav1_2 44 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0747 174 SUPERFAMILY DNA-binding domain 44 104 IPR016177 GO:0003677(InterPro)
Cec09g0747 174 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0747 174 Gene3D AP2/ERF domain 44 105 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g0747 174 PANTHER DNA-BINDING DOMAIN 17 144 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0130 Cec-Chr7:1377182 Cec09g0747 Cec-Chr9:6822629 5.80E-42 dispersed
Cec09g0747 Cec-Chr9:6822629 Cec10g0242 Cec-Chr10:2672790 5.00E-20 dispersed
Cec09g0746 Cec-Chr9:6805838 Cec09g0747 Cec-Chr9:6822629 1.40E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30203 PF00847 AP2 2.70E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0747 K14516 - csv:101205053 257.299