Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g0941 ATGACGCTTTACGAAGAGAATCCAGGGGAGTCTCGGAAAGGTTTGGAAGGTGAGGATCTGTATGAAGAACTGTGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTGTCGATGGAGAAAGGGTTTTTTACTTTCCTCAGGGTCATATGGAACAATTGGAAGAGTCCACGAATCAGGAGCTTAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTTTGTCGTGTTGTTAACATTCGTTTGCTGGCTGAAAAGGAAACAGATGAGGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCCCAAAGCCCTGATCCAGAGCCGCCTGAGCGTACAAGGCAAACTGTTCATTCCTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGTTTCTCAGTTCTTAGGAAGCATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGTTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACTGGGTGGAGTACATTTGTTACATCGAAACGGCTGGTTGCTGGGGATGCCTTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTTGGAGTTCGACGGCAGGCTCGGCAGCAGAGTTTGATGCCTTCCTCCGTGATATCTAGCCATAGTATGCACCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGAACGCAGACCTATTTCGTTGTTTATTACAAACCGAGAACTAGCCAATTCATCATCAGCTTGAACAAATACTTGGAGACGATTAAAAATGGATTTGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGTGATATTTCTCCGCAATGGTTGAATTCTAAATGGCGATCGCTAAAGATTCAATGGGATGAACCTGCTACAATTCAGAGGCCGGAACGAGTTTCTCCATGGGAGATTGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCCATAAAAAGTAAAAGGGCTCGTCCTGTCGAGATTCCTCCTCCTGAAATTACTTCCAGTTCAGCCCCTTCGGGCTTTTGGCTTCAAGGATCGACAATTCCTCATGAAATACCCCAACTAAGTGGTACAAATGAAGTTCAAAGCAGCAATAACCGGGTTGTCTGGGCTCTCGGACAGCGAAAACTCGATAGCAATAGCAACCACAGTAATCCAATAGCAAATGTTGAAGGCATCTGGCCTTCTCCTCCACTCAATATTTCCCTGAAGCTTTACCCAGATTCAACATTTGATAGCGAACTTGTTCAAAAGCAGCCACCACCCTCTCCTTATTCTTCATCTGTCACTTCAAAGCCTAGTAGTGACCTCATACAGCACGATCAACTGGAGAAAGGGAATAAACCCGACATTTCTCTCGGTTGCCGAATATTTGGAATTGATTTGAAAAATAACTCAAGCATTGTCTCTTCCTTGGAAAGAAAATCGTGTTGCCCAATGATGGTGGCCAATGGTGCCAAAGATCCAGTAGCTGCAGCTGCTGTGACACCTCCAGTCGTTGTTGGAAACCTCTCACAGCCTTCAAAGGAGCAGCTGCAAGCGTCATCAGAGCTGTCGACAAAGGGAACACAGACAAAACACATTTCCAATCTCTCATTGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCGGTTGGTCGAGCGGTCGACTTGACTACACTTGAAGGGTATGAAGATCTGATAGACGTGCTGGAGAATGTATTTGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCTGTCGTTTTCACGGATGACGAAAACGACGTGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGCGAAGAGGATCTTTATAAATTCAAGTGAAGAAGTGAAGAAGATGACTTGGGAAAGCAAGCTTGTTTCCCCATCTTCCTTGGATAGCTTGGATTCAGAGCGCAAGACTGAATCCTAA 2082 45.34 MTLYEENPGESRKGLEGEDLYEELWKACAGPLVEVPVDGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPERTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETIKNGFEVGMRFKMRFEGEESPERRFTGTIVGVGDISPQWLNSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAIKSKRARPVEIPPPEITSSSAPSGFWLQGSTIPHEIPQLSGTNEVQSSNNRVVWALGQRKLDSNSNHSNPIANVEGIWPSPPLNISLKLYPDSTFDSELVQKQPPPSPYSSSVTSKPSSDLIQHDQLEKGNKPDISLGCRIFGIDLKNNSSIVSSLERKSCCPMMVANGAKDPVAAAAVTPPVVVGNLSQPSKEQLQASSELSTKGTQTKHISNLSLRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDVLENVFEIKGELREMNKWSVVFTDDENDVMLVGDDPWPEFCKMAKRIFINSSEEVKKMTWESKLVSPSSLDSLDSERKTES 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8919860 8923310 + CePI673135_09g009410.1 Cec09g0941 211451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g0941 693 MobiDBLite consensus disorder prediction 462 486 - -
Cec09g0941 693 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
Cec09g0941 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 671 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec09g0941 693 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Cec09g0941 693 Gene3D - 287 358 - -
Cec09g0941 693 SUPERFAMILY CAD & PB1 domains 579 659 - -
Cec09g0941 693 CDD B3_DNA 123 225 IPR003340 GO:0003677(InterPro)
Cec09g0941 693 SUPERFAMILY DNA-binding pseudobarrel domain 116 254 IPR015300 -
Cec09g0941 693 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Cec09g0941 693 Pfam Auxin response factor 251 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec09g0941 693 Gene3D - 579 671 - -
Cec09g0941 693 MobiDBLite consensus disorder prediction 555 576 - -
Cec09g0941 693 MobiDBLite consensus disorder prediction 99 121 - -
Cec09g0941 693 Gene3D - 122 227 IPR015300 -
Cec09g0941 693 FunFam Auxin response factor 123 227 - -
Cec09g0941 693 FunFam Auxin response factor 578 671 - -
Cec09g0941 693 FunFam Auxin response factor 286 357 - -
Cec09g0941 693 ProSiteProfiles PB1 domain profile. 583 664 IPR053793 -
Cec09g0941 693 Pfam AUX/IAA family 568 619 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g0941 Cec-Chr9:8919860 Cec11g0145 Cec-Chr11:1706992 9.20E-17 dispersed
Cec01g0176 Cec-Chr1:1705659 Cec09g0941 Cec-Chr9:8919860 1.50E-199 transposed
Cec02g2211 Cec-Chr2:39533675 Cec09g0941 Cec-Chr9:8919860 7.50E-125 transposed
Cec04g2041 Cec-Chr4:38502579 Cec09g0941 Cec-Chr9:8919860 5.50E-86 transposed
Cec06g2027 Cec-Chr6:33396158 Cec09g0941 Cec-Chr9:8919860 3.70E-158 transposed
Cec07g1249 Cec-Chr7:28004971 Cec09g0941 Cec-Chr9:8919860 2.30E-209 transposed
Cec11g0032 Cec-Chr11:438194 Cec09g0941 Cec-Chr9:8919860 9.50E-176 transposed
Cec07g0171 Cec-Chr7:1786097 Cec09g0941 Cec-Chr9:8919860 4.10E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30217 PF02309 AUX_IAA 2.80E-10 CL0072 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g0941 K14486 - csv:101205805 1242.64