Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1000 ATGAAGAAACCAAATCAGGTATTTAGAACAACAATCCTCACTGCAGCACCAAAATTGGATACCCTTAATTTCCACAACTCCAATGTCGATTCTGAAATAGCTTTAATCGGCAATCGCAATCCCTCTCATTTCCGCACTGTGGACATGGATGCTAAGTTCGATACTTCATCTTCTGCTTCTAAAACTGTGGACGATCTTTGGAAGGAGTTGAAGGAGGAGGCTGTTGGAGAGATGATATTGGAGGGTTTTCTTCAAGCCAAACCACAGGATCAGGATGTGAGGATTTTGAATCCGTTTAGTTGTTTAAAGGATTTCGATAGGGTTTATGTTGAAGAAGAGACTGTTGGGTTTGGGAATGGAGTTGACATTAGTGGGAGAGGGAAGAGAAGGCGCGCAGCTATGGAACCAATGGATGAAGCTGCACTGCAAAGACAACGGAGGATGATTAAGAACAGGGAGTCGGCTGCTAGGTCCAGAGAAAGGAAACAAGCACATCAAGTTGAGTTAGAGTTAATAGCTTCGAGACTTGAGGAAGAGAACGAGCGATTATTGAAAGAGAAGGCCGAGAGATCTAAGGAACGACTAAAGCAGTTGATGGAAAAAGTAATTCCAGTTGTGGAGAAACAAAGACTACCACGTGTCATATGCTGGGATTTTGAACTAAAGATCAACCCGACAAGAGATGATGATCCTTCCTCGACCTTTGAACTTCAGTTGGCCAAAGGCACTGCCACTCCTTTTTTCTGCTCTAATGAAACCAATTCCATGCTCATTCTCACTGCCAAACTCACAGGCTTTGCAGCAGATGACATTGTGATAACTATTAATGGAAGCGGTACTTGGATTGAGATTGGCTGGGGAAAACTTGTTCGGAAAGTGGAGATTACGAGAAAGACGTACAAGAAAGAAACAGAGACAAGAAGGTTCAAGAAGATTTTTCGAATTCCGGATGGTGTGGTTTTGGACGAAATCAAGGCGACGTATAATGACAAAGAATCAGTTTTGAAGATTTCGATGCCGAAATTGGTGGACGGAATGCTTGGGGTAGGAATTGAAGAAGTGAAGGAACAGGAAGCTGGTGAAGCCACATTCGGATCTCAGGATTATCAAGAGGAGCTGCTTGAGACTCTGGAAACTGGCAGAAAGACCAATTTGGTTGATGATAATCATGAAAAGGAGGATGACGATGCTGCTAATGGAGAAGTTGAAGAAGAAAATGTCGGGCCCGAAGCATTTCATGAGAGAGAATATGTAGCAGAAATGCCGCCAGAAGAGATCAAGAAGTTGAAGGGCAATGAGATGGATCAAGATATTGATGGAGAATCCAATGACGACTACTCTGAAAGGAAACAGACAGTAAAAGTAGCAACAAAAACTACGGAGTATGAGGCCACAAGAGAAAGTGTTAATGGAGAAATCAAGGTTCCCAGGGTTAAGAGTAAGGAAGGGATAGATGTGGCTGAAGGAACAGCCAACCATCAAAAAGAAAAACGACTCGATGCTGGAGCATGTAATGGTGATAAAGCAACCCTGATAAATAAGAAACCATATGTCAAGACACAATCAAAAGCTTCTATGGATCGAGAGGCACAAGTATTAGACCGTGAACTTTCGCAGCCAAATCGACTGACTCAAGCAGAACCGGGGACGCAGGAAACATACAAAAACATTTGGGAATTGAAAGAGCTTGAAACAGATAAAGGAAGTCCATATTTGCAAAGCCCTGTACATCAGCACGAAGGAAAAGGAGTTGATCAAAAAGGAAGTTCCCAAACAAAAGATGAAATTAAGGACGCAAGAGAAGAATGCAAGTCAACACATGAAGATTCCAGCAAGGAAGCAAAACAAGAGAAGAAACAAGATTCAAAACAGTTTAAAATGCGTACTCCAATCATCATTGCAGGGTCAGCGCTTCTCGCATCCCTTGCAATTGTTGCGTTTAACTTAATGAAAAGTAAAAGACGAGAGAAAAATATGAGAGGGGCTTCAATTTTCCAGCAGCCAGCAGCCAGGAACCGGAATCGACTTAAGCACATGGCGCTCTCTCCTTCTGCTGACACAAACATTGTTTTAGTTTTCACATGGCATGGATCCAGAGACTGA 2103 42.61 MKKPNQVFRTTILTAAPKLDTLNFHNSNVDSEIALIGNRNPSHFRTVDMDAKFDTSSSASKTVDDLWKELKEEAVGEMILEGFLQAKPQDQDVRILNPFSCLKDFDRVYVEEETVGFGNGVDISGRGKRRRAAMEPMDEAALQRQRRMIKNRESAARSRERKQAHQVELELIASRLEEENERLLKEKAERSKERLKQLMEKVIPVVEKQRLPRVICWDFELKINPTRDDDPSSTFELQLAKGTATPFFCSNETNSMLILTAKLTGFAADDIVITINGSGTWIEIGWGKLVRKVEITRKTYKKETETRRFKKIFRIPDGVVLDEIKATYNDKESVLKISMPKLVDGMLGVGIEEVKEQEAGEATFGSQDYQEELLETLETGRKTNLVDDNHEKEDDDAANGEVEEENVGPEAFHEREYVAEMPPEEIKKLKGNEMDQDIDGESNDDYSERKQTVKVATKTTEYEATRESVNGEIKVPRVKSKEGIDVAEGTANHQKEKRLDAGACNGDKATLINKKPYVKTQSKASMDREAQVLDRELSQPNRLTQAEPGTQETYKNIWELKELETDKGSPYLQSPVHQHEGKGVDQKGSSQTKDEIKDAREECKSTHEDSSKEAKQEKKQDSKQFKMRTPIIIAGSALLASLAIVAFNLMKSKRREKNMRGASIFQQPAARNRNRLKHMALSPSADTNIVLVFTWHGSRD 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9675679 9683896 + CePI673135_09g010000.1 Cec09g1000 211510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1000 700 Pfam bZIP transcription factor 139 201 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g1000 700 Coils Coil 162 201 - -
Cec09g1000 700 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 24 196 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cec09g1000 700 SUPERFAMILY Leucine zipper domain 143 193 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g1000 700 MobiDBLite consensus disorder prediction 568 624 - -
Cec09g1000 700 Gene3D - 142 202 - -
Cec09g1000 700 MobiDBLite consensus disorder prediction 519 550 - -
Cec09g1000 700 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 238 357 IPR002068 -
Cec09g1000 700 MobiDBLite consensus disorder prediction 580 624 - -
Cec09g1000 700 Pfam Hsp20/alpha crystallin family 259 342 IPR002068 -
Cec09g1000 700 MobiDBLite consensus disorder prediction 381 396 - -
Cec09g1000 700 Gene3D - 220 345 IPR008978 -
Cec09g1000 700 CDD ACD_sHsps-like 251 341 - -
Cec09g1000 700 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 193 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g1000 700 CDD bZIP_plant_BZIP46 143 189 - -
Cec09g1000 700 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 146 161 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g1000 700 SMART brlzneu 139 201 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g1000 700 SUPERFAMILY HSP20-like chaperones 234 342 IPR008978 -
Cec09g1000 700 MobiDBLite consensus disorder prediction 381 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1000 K14432 - - cit:102616186 169.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1000 Cec-Chr9:9675679 Cec09g1519 Cec-Chr9:25381319 9.60E-14 dispersed
Cec09g1000 Cec-Chr9:9675679 Cec10g1921 Cec-Chr10:33981053 3.20E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1500 Cone7ag1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g00948 Cam09g0999 Cec09g1000 Cco09g1012 . . Cre09g0962 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008746 0 0 0 0 0 1 2 1 1 2 2 1 2 1 0 2 1 2 0 1 2 0 2 1 1 2 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30222 PF00011 HSP20 1.10E-06 CL0190 Cec TF