Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1039 ATGAGAGATCCCTGCCCAGGCCGGTCTCCACGGGTTCATCTTGAAGGAAAAATGAACACCTCTATCCTCAACCGCTCAAGGGCATGCCCTCCCTCCCATTACCACCCAACTGAACCCCCGACACGCCGTTCCTGCCCCGACGCTGTCTCACCGGCTGCCGGCGCACTCAGCTGCCGGAGTTCCTCAGCCTTCTCTCTCGCCCTCGCCGATTTTCTGCTATCTCCAACGCTGGCATCTCTCTGCTCTTCTCATAATTGTCGTGAAAGATCTACCGCTCACCTGACTCTTGCCGCCGACAGAGCTAGTTCGTTCGTCATGGCGGACGTGATGCTGATGAAGGATATTGAGGATACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCCATTCGTCTACCTCCTGGCGACGATTTCGGAATTATTAGTGATGATGAAGAAGTTCTACAAGAGGAGAGTCTAGAATTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTACGTAAAATTTTTGGGCAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATCGAGTATGGCACTCCACAGGAGGCTGAGCTTGCTAAAGAGAAAACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTCAACATGTTTGAGGACTTCGACAGATTCATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAGCCCATATACTGCTGGGGAAAATCTTCAAAAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAACGATGCTAGGCATTTGAAGCCTGAGCCTGTCTACAAGCGCACATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTGACTTACAGCAGTCATGAGCCCAGCAATCCCCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCTATTGGAGGAACAGGTGGTGTTGCCGGTGTATCTTGGCCTGTTTTTAGGTGGAGTGGTGGGAAAGATGATAAATACTTTGCCAGAATTGGGAAAAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTGTTGACAAAAAATCTTTGAAGGTTGAAAATGTTGTGGATTTCTGCTGGTCCCCTACAGATCCCATTCTTGCTCTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTTCAAATCTCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCAGTGAAGTGTTGGAGCTTGAGAACAAGAACGACAAGATAATTGCCTTTGCCTGGGAGCCAAAGGGGCAGAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCGAAGCTTACAACTCTCAAAGGCAAGCAAGCCAATGCTCTTTTCTGGTCGCCTGCTGGACGCTTTATTATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCAACTGCGGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCTACTGCTGTAACTTCCGTTCACGAGATGGAGAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCCGAGCAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGCGAGCAAGATCGCGAGAAACGGAGAATGTTGAAGGATGAGTGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGGGATGGTGAAGCCAGCGACGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTCTGGATGTGTCGGAGGAAGTTTTGTCCCTTGATTTTGGGCAGGAATGA 2475 46.63 MRDPCPGRSPRVHLEGKMNTSILNRSRACPPSHYHPTEPPTRRSCPDAVSPAAGALSCRSSSAFSLALADFLLSPTLASLCSSHNCRERSTAHLTLAADRASSFVMADVMLMKDIEDTAGRLGIDLSQVDFDAIRLPPGDDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEISPYTAGENLQKWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWSGGKDDKYFARIGKNVISVYETETFSLVDKKSLKVENVVDFCWSPTDPILALFVPELGGGNQPARVSLVQISSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPSEVLELENKNDKIIAFAWEPKGQRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSLDFGQE 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10062919 10067965 - CePI673135_09g010390.1 Cec09g1039 211549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1039 824 Gene3D - 160 259 IPR012677 -
Cec09g1039 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 252 IPR000504 GO:0003723(InterPro)
Cec09g1039 824 SUPERFAMILY RNA-binding domain, RBD 163 246 IPR035979 GO:0003676(InterPro)
Cec09g1039 824 MobiDBLite consensus disorder prediction 25 48 - -
Cec09g1039 824 SMART rrm1_1 166 248 IPR000504 GO:0003723(InterPro)
Cec09g1039 824 SUPERFAMILY DPP6 N-terminal domain-like 322 705 - -
Cec09g1039 824 Pfam Eukaryotic translation initiation factor eIF2A 511 711 IPR013979 -
Cec09g1039 824 FunFam Eukaryotic translation initiation factor 3 subunit B 286 487 - -
Cec09g1039 824 Coils Coil 792 812 - -
Cec09g1039 824 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 153 818 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cec09g1039 824 PIRSF Transl_init_eIF3b 112 819 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cec09g1039 824 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 141 813 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cec09g1039 824 FunFam Eukaryotic translation initiation factor 3 subunit B 516 731 - -
Cec09g1039 824 CDD RRM_eIF3B 164 248 IPR034363 -
Cec09g1039 824 Pfam RNA recognition motif 187 241 IPR000504 GO:0003723(InterPro)
Cec09g1039 824 Gene3D - 285 533 IPR015943 GO:0005515(InterPro)
Cec09g1039 824 FunFam Eukaryotic translation initiation factor 3 subunit B 160 259 - -
Cec09g1039 824 Gene3D - 537 726 IPR011042 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1035 Cec-Chr9:10036106 Cec09g1039 Cec-Chr9:10062919 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1039 K03253 - csv:101213144 1416.36