Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec09g1039 | ATGAGAGATCCCTGCCCAGGCCGGTCTCCACGGGTTCATCTTGAAGGAAAAATGAACACCTCTATCCTCAACCGCTCAAGGGCATGCCCTCCCTCCCATTACCACCCAACTGAACCCCCGACACGCCGTTCCTGCCCCGACGCTGTCTCACCGGCTGCCGGCGCACTCAGCTGCCGGAGTTCCTCAGCCTTCTCTCTCGCCCTCGCCGATTTTCTGCTATCTCCAACGCTGGCATCTCTCTGCTCTTCTCATAATTGTCGTGAAAGATCTACCGCTCACCTGACTCTTGCCGCCGACAGAGCTAGTTCGTTCGTCATGGCGGACGTGATGCTGATGAAGGATATTGAGGATACGGCTGGTCGGCTTGGGATAGATCTCTCCCAAGTTGATTTTGACGCCATTCGTCTACCTCCTGGCGACGATTTCGGAATTATTAGTGATGATGAAGAAGTTCTACAAGAGGAGAGTCTAGAATTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCGGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTACGTAAAATTTTTGGGCAGATTGGAGTAATTAAGGATGATGGTTTGTGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGTTACTGCTTTATCGAGTATGGCACTCCACAGGAGGCTGAGCTTGCTAAAGAGAAAACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTCAACATGTTTGAGGACTTCGACAGATTCATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAGCCCATATACTGCTGGGGAAAATCTTCAAAAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACTGAGGTCTTCTGGAACGATGCTAGGCATTTGAAGCCTGAGCCTGTCTACAAGCGCACATTCTGGACTGAGAGTTTTGTGCAGTGGTCCTCATTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTGACTTACAGCAGTCATGAGCCCAGCAATCCCCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTAAGAACTGGAAAAGTAATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCTATTGGAGGAACAGGTGGTGTTGCCGGTGTATCTTGGCCTGTTTTTAGGTGGAGTGGTGGGAAAGATGATAAATACTTTGCCAGAATTGGGAAAAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTGTTGACAAAAAATCTTTGAAGGTTGAAAATGTTGTGGATTTCTGCTGGTCCCCTACAGATCCCATTCTTGCTCTGTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTTCAAATCTCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACAAAGACGAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCCAGTGAAGTGTTGGAGCTTGAGAACAAGAACGACAAGATAATTGCCTTTGCCTGGGAGCCAAAGGGGCAGAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCTATGCGAAGCACACACAACAGTGGCCGAGTGTCGAAGCTTACAACTCTCAAAGGCAAGCAAGCCAATGCTCTTTTCTGGTCGCCTGCTGGACGCTTTATTATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCAACTGCGGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCTACTGCTGTAACTTCCGTTCACGAGATGGAGAATGGTTTCAACATATGGTCCTTTAATGGAAAACTCCTCTATCGAATCTTGAAGGACCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCCGAGCAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTACTGAGCGAGCAAGATCGCGAGAAACGGAGAATGTTGAAGGATGAGTGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGTTGTTGCGGCAGAAGCTGCGGGATGGTGAAGCCAGCGACGAAGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTCGAAGAGATTCTGGATGTGTCGGAGGAAGTTTTGTCCCTTGATTTTGGGCAGGAATGA | 2475 | 46.63 | MRDPCPGRSPRVHLEGKMNTSILNRSRACPPSHYHPTEPPTRRSCPDAVSPAAGALSCRSSSAFSLALADFLLSPTLASLCSSHNCRERSTAHLTLAADRASSFVMADVMLMKDIEDTAGRLGIDLSQVDFDAIRLPPGDDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFDRFMKVPDEWAPPEISPYTAGENLQKWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRTFWTESFVQWSSLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWSGGKDDKYFARIGKNVISVYETETFSLVDKKSLKVENVVDFCWSPTDPILALFVPELGGGNQPARVSLVQISSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPSEVLELENKNDKIIAFAWEPKGQRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEQEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEVLSLDFGQE | 824 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10062919 | 10067965 | - | CePI673135_09g010390.1 | Cec09g1039 | 211549 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec09g1039 | 824 | Gene3D | - | 160 | 259 | IPR012677 | - | |
Cec09g1039 | 824 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 165 | 252 | IPR000504 | GO:0003723(InterPro) | |
Cec09g1039 | 824 | SUPERFAMILY | RNA-binding domain, RBD | 163 | 246 | IPR035979 | GO:0003676(InterPro) | |
Cec09g1039 | 824 | MobiDBLite | consensus disorder prediction | 25 | 48 | - | - | |
Cec09g1039 | 824 | SMART | rrm1_1 | 166 | 248 | IPR000504 | GO:0003723(InterPro) | |
Cec09g1039 | 824 | SUPERFAMILY | DPP6 N-terminal domain-like | 322 | 705 | - | - | |
Cec09g1039 | 824 | Pfam | Eukaryotic translation initiation factor eIF2A | 511 | 711 | IPR013979 | - | |
Cec09g1039 | 824 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 286 | 487 | - | - | |
Cec09g1039 | 824 | Coils | Coil | 792 | 812 | - | - | |
Cec09g1039 | 824 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 153 | 818 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Cec09g1039 | 824 | PIRSF | Transl_init_eIF3b | 112 | 819 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Cec09g1039 | 824 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 141 | 813 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Cec09g1039 | 824 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 516 | 731 | - | - | |
Cec09g1039 | 824 | CDD | RRM_eIF3B | 164 | 248 | IPR034363 | - | |
Cec09g1039 | 824 | Pfam | RNA recognition motif | 187 | 241 | IPR000504 | GO:0003723(InterPro) | |
Cec09g1039 | 824 | Gene3D | - | 285 | 533 | IPR015943 | GO:0005515(InterPro) | |
Cec09g1039 | 824 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 160 | 259 | - | - | |
Cec09g1039 | 824 | Gene3D | - | 537 | 726 | IPR011042 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec09g1035 | Cec-Chr9:10036106 | Cec09g1039 | Cec-Chr9:10062919 | 0.00E+00 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec09g1039 | K03253 | - | csv:101213144 | 1416.36 |