Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1073 ATGTGTAACAAGCTGAACCAAATCAGAACCGGTTGGTTTGGTCGGGTTCACAAGCAAGACGTGGACCAAAGTGGACCCGGACCCGGTTGGTGCTTGGGCCTTCACTTGGTTCGCGTGGTCTCACGGCCATCGAACCAAAATTCCCTTTTCCCTCTCTTTCATTTGCTTCTTCGTCTTCATCCATCCATGGAGAGCCTGAAGAAGTCAGTGATCAAAATCGCCTATACCAGAGACCACGCTAACCTCTCTTCTCTGCAACGCTCTTTCATCCCCTTCCTCTACATGGCGTCTTCTCTCTACAAGCTCGGTCTGTCCCTTCGTCATCATTTCTACCTCTACGGCATATTTCGCAAGCATCGGTTGCCAGTGCCAGTTATTAGTGTTGGGAATTTGACTTGGGGAGGCAATGGGAAAACACCAATGGTCGAGTTCATTGCCTTATGGCTTGCGGGCTCTGGGATTTCGCCTCTAATTCTTAATAGGGGCTATGCTGGTGGAGACGAAGCAAGAATGCTTAGGAGGCATCTTTCTGGGAGTTCCATTAAAGTAGGTATTGGAGCAGATAGGAGAGCTACTGCTGCTTGGTATTTTAACAAATATGGTTATGTTGAATCTCAAAGTAGCACGTTGACTGAGAAGCATTGCTTAGAACAAGTGGGAAATCTTCCTAAGTCTGAAAAATTTGGTGCTGTTATCCTTGATGATGGAATGCAGCACTGGAGTTTGCACCATGACTTGGAGGTTGTTATGTTCAATGGGATAACATTGTTGGGAAATGGGCAATTATTACCACTTGGACCTTTAAGAGAACCATTAGCTGCACTCAAGAGGGCAGACGTTGCCATTATTCATCACGCTAATCTGGTTTCAGCACAAAATATTGAAGATATTGTGATAATGTTGCGGAAAATTAAGGATTCACTTACCGTGGTGTTTACTGAAATGTGTCCCTCATTCTTCTTTGAAGTGACAAATATAAACTCCATAATATCCTTGGGAACATTTTCTAAGAGTGTAGTATTATGCGTCTCTGCCATTGGCTCTGCTGATGCTTTTGTGCAGACAATGCAAAAGATAGGAGCATATCATGTTGATCGACTCGACTTCAGTGACCATCACGTCTTTCAAGACAGGGATATTGCACTGATCAAAATAAAGCTTGAGGAATTGGAGAAGAAATTTGCTTCCAAGCCAGTCATTGTTGTTACGGAAAAGGATTATGATCGGGATCCTATGACATTCAAGGGCTTGCATCCATACCGTGTTTTCGCTCTCCGTTCTCAACTGCAAATCATGCGCACCAAAGGTTGCAGTGAGAATAGCTTCAAGACGCTGTTGGAGTCGGTGGTACGAGTAAAACTCTCTTCTGTAATGAGGTATTCTGAGCTCAAACAGCCGTTCAGCGTTCACCCTTCGCGTTTTCTTTCAAACTTCCCGTCGTTCAATCACTCCCCTACACGCCTCGGTCGCTCTCGTTTCGCCGGTGCCGGCATCCCTCTTCGAGTCTTGGCCTCTGCGTGGGTGTTCATTGATACATCCGAAATCAAGCGTGTTACATTCGTTGCTTTGGGGATGCCCTCAATATCAACCACATCTTCTCTGTTTCGATTACCGGTAAAATCATGTAAAACCCTGCTGTGGTTCTTTTTGTTATTCGCCTTCTTTCTCATTAGTCATTCCTGCAAAGGGATAGAAACAATGAAGTTGAAGCTCGACAGCAAGAGCAAGAGCTTGCTGCAGGCAAGCAAGCTAAAGAAAAAGCATGGTGAAAAGAAAAGCCACGTCAATGAAAGCAGCAAGAGCCAAGTGGAAAACCAGAACAGTACCGAACTACATTTAGAACAAGAAGCTTTAACCTTAGATGAGGCTCCATTACAACAACTTTTGGATTCTGCTCCACCCTTGGATTATAGCGAGGATCATGACCATGGTAATTTAGAGAATGATCAGGACCAAGAAAACGAGAATAACAACCCCGTACCTGATCATGTAGATGAGGAAAGCGATTCATCTGAGGATGAGGTAGCTCCTAGGAACACTATTGGAGATGTTCCCTTGGAATGGTATAGAGACGAGAAGCATATTGGATATGACATATCGGGAAAGAAAATATTGAAGAAAGAAAGAGAAGACAAATTACAATCATTTTTAGCAAGTGCTGATGACTCAAAAAGTTGGCGCAAGGTATATGACGAATATAATGATGAGGTAATAGAGTTATCGAAGGAAGAAGTCAGGCAACTGCGGAGACTGCTCAAAGGAAAGGCTCCACATGCAGACTTTGATCCATATCCGTCTTATGTTGATTGGTTTAAGTGGGATGATGCTAAGCACCCACTGTCAAATGCACCTGAACCAAAGAGGCGTTTTGTTCGGTCAAAATGGGAAGCCAAGAAGGTGGTTCAATTAGTTCGGGCAATTCGAAATGGACATATTAATTTTGACAAGCCGAAAGAAGAGCAACATTTCTACCATTTGTGGGGTGATGATTCTAGCTCCACAGAGAAGACCACACATTTGTCTTACATTCCTGCACCAAAACCAAAGTTGCCAGGTCATGATGAATCATATAATCCTTCATTGGAATATATCCCTACTCAAGAAGAAATAAACTCATATCAGTTAATGTATGAAGAAGATCGACCAAAGTTTATTCCTAGGAGGTTTACATCCATGAGAAGTGTACCTTCCTATGACAATGCTCTTAAGGATGCATTTGAACGTTGTTTGGATTTGTACTTGTGCCCTCGTGTCCGGAAGAAACGTATTAATATTGATCCTGAATCCTTGAAGCCTAAGCTGCCAAACCGGAAAGATCTTAGACCTTATCCGACTACATGCTATCTTGAATATAGAGGTCATAAGGATGCTGTAATGTCCATTTCAACTGAAGCCAACGGCCAATGGATTGCTTCAGGTTCATTGGATGGAACTGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGGGAGCTTGGGGAAGCTGTGAAGTATGTAGCTTGGAATCCTTTGCCTGAGCTTCCGATATTGGCTGCTGCTGTGGGTGTTGATGTATTGCTTTTAAACACTGGTTTTGGGGACGGGGAGGTTCAAGCAAAAATTAAGGAACTTCTCCATGTTGACACACTTCCTGGAACAGAAAATTCTGATAAAATGCCAGTTGCAACCTGGCTTCAAGATGACAAGATCGAGGGGATTAGATTGAGGCATTTTAAGACTGTAACTGCAGTTGAGTGGCATCGTAAAGGAGATTACCTTTCAACAGTTATGCCAGCTGATATCCTATTTAATTTTCTCTCTAGAAAGCTAACACAAAAAATTCCGTTCAAGTTGCACGGGCTTCCTGTTTCATCAGTTTTTCATCCCACTCAATCCATCCTCTTTGTATCGACAAAGAAGGAGGTCCGTGTTTATAATCTATTGAAGCAAAAACTCATGAAGAAACTGAAAACTGGACTCCGGGAAGTTTCTTCTATTGCTGTGCATCCAGCTGGTGATAATGTTATTGTGGGAAGCAGAGAAGGAAAATTATGTTGGTTTGATATGGACCTTTCATCACAGCCTTACAAAATTCTCAGCTGTCATCCAAAAGATATCACAAATGTTGCCTTCCATCGATCACGCCCGTTGTTCGCATCCTGCTCAGATGATTGCACTGCATATGTTTTCCATGGGATGGTTTACTTGGATCTGACACAGAATCCCCTTATTACACCGTTGGAAATACTAAGAGGACACAAAAACGTTAATGGAAGAGGAGTAATGGATTGCAAATTTCACCCGATGCAGCCATGGTTATTTACTGCTGGTGCAGATTCACAACTTGGTTATGTGGAACTCGTTGAGGCCATTGCTATTGAAATCTCTTGGTTGGGAATTGTCGATGTGCTAATGATTTCCAGCTTCGTGGTTCCGTCCTTGGTTTCACTTAGGCCAATAATAGGTGTAACTTTGCTACACATGTATTAG 3978 42.91 MCNKLNQIRTGWFGRVHKQDVDQSGPGPGWCLGLHLVRVVSRPSNQNSLFPLFHLLLRLHPSMESLKKSVIKIAYTRDHANLSSLQRSFIPFLYMASSLYKLGLSLRHHFYLYGIFRKHRLPVPVISVGNLTWGGNGKTPMVEFIALWLAGSGISPLILNRGYAGGDEARMLRRHLSGSSIKVGIGADRRATAAWYFNKYGYVESQSSTLTEKHCLEQVGNLPKSEKFGAVILDDGMQHWSLHHDLEVVMFNGITLLGNGQLLPLGPLREPLAALKRADVAIIHHANLVSAQNIEDIVIMLRKIKDSLTVVFTEMCPSFFFEVTNINSIISLGTFSKSVVLCVSAIGSADAFVQTMQKIGAYHVDRLDFSDHHVFQDRDIALIKIKLEELEKKFASKPVIVVTEKDYDRDPMTFKGLHPYRVFALRSQLQIMRTKGCSENSFKTLLESVVRVKLSSVMRYSELKQPFSVHPSRFLSNFPSFNHSPTRLGRSRFAGAGIPLRVLASAWVFIDTSEIKRVTFVALGMPSISTTSSLFRLPVKSCKTLLWFFLLFAFFLISHSCKGIETMKLKLDSKSKSLLQASKLKKKHGEKKSHVNESSKSQVENQNSTELHLEQEALTLDEAPLQQLLDSAPPLDYSEDHDHGNLENDQDQENENNNPVPDHVDEESDSSEDEVAPRNTIGDVPLEWYRDEKHIGYDISGKKILKKEREDKLQSFLASADDSKSWRKVYDEYNDEVIELSKEEVRQLRRLLKGKAPHADFDPYPSYVDWFKWDDAKHPLSNAPEPKRRFVRSKWEAKKVVQLVRAIRNGHINFDKPKEEQHFYHLWGDDSSSTEKTTHLSYIPAPKPKLPGHDESYNPSLEYIPTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPSYDNALKDAFERCLDLYLCPRVRKKRINIDPESLKPKLPNRKDLRPYPTTCYLEYRGHKDAVMSISTEANGQWIASGSLDGTVRIWEVETGRCLKVWELGEAVKYVAWNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKIKELLHVDTLPGTENSDKMPVATWLQDDKIEGIRLRHFKTVTAVEWHRKGDYLSTVMPADILFNFLSRKLTQKIPFKLHGLPVSSVFHPTQSILFVSTKKEVRVYNLLKQKLMKKLKTGLREVSSIAVHPAGDNVIVGSREGKLCWFDMDLSSQPYKILSCHPKDITNVAFHRSRPLFASCSDDCTAYVFHGMVYLDLTQNPLITPLEILRGHKNVNGRGVMDCKFHPMQPWLFTAGADSQLGYVELVEAIAIEISWLGIVDVLMISSFVVPSLVSLRPIIGVTLLHMY 1325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10456074 10471086 + CePI673135_09g010730.1 Cec09g1073 211583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1073 1325 PANTHER RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN 584 1277 IPR028598 GO:0000463(PANTHER)|GO:0030687(PANTHER)|GO:0042254(InterPro)|GO:0043021(PANTHER)|GO:0070545(PANTHER)
Cec09g1073 1325 SMART BOP1NT_2 689 944 IPR012953 GO:0006364(InterPro)
Cec09g1073 1325 Pfam WD domain, G-beta repeat 1190 1226 IPR001680 GO:0005515(InterPro)
Cec09g1073 1325 Pfam WD domain, G-beta repeat 946 982 IPR001680 GO:0005515(InterPro)
Cec09g1073 1325 Pfam WD domain, G-beta repeat 1242 1277 IPR001680 GO:0005515(InterPro)
Cec09g1073 1325 SMART WD40_4 1239 1282 IPR001680 GO:0005515(InterPro)
Cec09g1073 1325 SMART WD40_4 1145 1184 IPR001680 GO:0005515(InterPro)
Cec09g1073 1325 SMART WD40_4 1105 1142 IPR001680 GO:0005515(InterPro)
Cec09g1073 1325 SMART WD40_4 1188 1227 IPR001680 GO:0005515(InterPro)
Cec09g1073 1325 SMART WD40_4 944 983 IPR001680 GO:0005515(InterPro)
Cec09g1073 1325 Hamap Tetraacyldisaccharide 4'-kinase [lpxK]. 70 451 IPR003758 GO:0005524(InterPro)|GO:0009029(InterPro)|GO:0009245(InterPro)
Cec09g1073 1325 ProSiteProfiles Trp-Asp (WD) repeats profile. 951 992 IPR001680 GO:0005515(InterPro)
Cec09g1073 1325 Pfam Tetraacyldisaccharide-1-P 4'-kinase 92 436 IPR003758 GO:0005524(InterPro)|GO:0009029(InterPro)|GO:0009245(InterPro)
Cec09g1073 1325 FunFam Ribosome biogenesis protein BOP1 homolog 934 1280 - -
Cec09g1073 1325 MobiDBLite consensus disorder prediction 632 680 - -
Cec09g1073 1325 Pfam BOP1NT (NUC169) domain 689 944 IPR012953 GO:0006364(InterPro)
Cec09g1073 1325 SUPERFAMILY WD40 repeat-like 908 1277 IPR036322 GO:0005515(InterPro)
Cec09g1073 1325 ProSitePatterns Trp-Asp (WD) repeats signature. 970 984 IPR019775 -
Cec09g1073 1325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 951 988 - -
Cec09g1073 1325 NCBIfam tetraacyldisaccharide 4'-kinase 116 407 IPR003758 GO:0005524(InterPro)|GO:0009029(InterPro)|GO:0009245(InterPro)
Cec09g1073 1325 Hamap Ribosome biogenesis protein @gn(BOP1) [BOP1]. 567 1281 IPR028598 GO:0042254(InterPro)
Cec09g1073 1325 MobiDBLite consensus disorder prediction 635 665 - -
Cec09g1073 1325 Gene3D - 934 1280 IPR015943 GO:0005515(InterPro)
Cec09g1073 1325 MobiDBLite consensus disorder prediction 583 608 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1073 K14824 - - csv:101220511 1249.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0102 Cec-Chr8:1956200 Cec09g1073 Cec-Chr9:10456074 0.00E+00 dispersed
Cec09g1073 Cec-Chr9:10456074 Cec10g1739 Cec-Chr10:32056419 8.20E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g529 . . . . . Bpe08g01118 . . . . Cma01g01123 . Car01g00996 . Sed04g3221 . Cpe02g00778 Bhi09g01657 Tan01g4565 Cmetu01g0146 . Hepe01g1264 Mch11g1198 . . . . . . . . . Cone9ag0064 . . Lsi02g01897 Csa07g01102 . . . . . . . . Bma07g01289 . . Cmo01g01174 . . . . . . . . . . . . . . Cla09g01016 Cam09g1073 Cec09g1073 Cco09g1092 . . Cre09g1038 . . . Cme01g01020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003594 1 10 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 1 2 1 1 2 1 1 2 0 1 1 0 43