Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1076 ATGGACTGGACCAGAGGCCCTGCCGTCGGCCGCGGCTCCTCCGCCACCGTCTATTTGGCCACAGCCGCCTCCTCCGGCCACCAATTCGCCGTCAAATCCACCGACCTCACTTCATCGGCGCTGTTGCAGAAGGAGCACGCTCTTCTTTCCAATTTGAGCTCCCCATATCTAATCAAGTGCTTAGGTTTCGACATTGAAACCGAAGCCTTGAATCCGCCGGTGTTCAATTTGTTCATGGAGTATTCGCCGGAGGGGACACTGTGGGATGCGATACAGAGCAACGGCGGTCGGATGGAGGAATCGACGATCGGAGTATTTTCGCGTCAGATTCTCAAAGGATTGGAGTACCTTCACGCTAATGGATTAGCACATTGCGATATCAAGAGCCGGAATCTGTTATTGAGTGATGAGGGTTTGAAAATCGCCGATCTCGGTTGTGCGAAATTTGTGGATGAAATTTCCGGTAATGGAGTTGGGGCTTTTTCTGGTTCGCCGGCGTTCATGGCGCCCGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCGGCGGATGTTTGGGCTTTTGGATGCACAGTCATTGAAATGGCTACTGGCGATCATCCATGGCCGGAGATGGAGGATCCGGTATCGGCGTTGTATCGGATTGGATTTTCCGGCGAGTTACCGGAGATCCCGCGGTGGTTGTCGAAGGGTGCGAGGGATTTTGTCGCCAAGTGTTTGATAAAAGACCCGAAAGAAAGATGGACTGTGAAACGGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCTGAATCGGAGATTGAATGCTCGAGGATGAAAACGATGAATTCTTCTCCGAACTGTGTTTTGGATCAGAGCTTTTGGGATTCAATGGAAGATTTGGAGACTCCATTGAAGGTGACCCATCAAGCTTCTATGGCGGGTTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCTTCTGATTGGGATTTGGAATGGGATGATCGGGATTGGGTTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGAAAATGGATCTGTGAGCTCAGATATTTTTGCCTCAGTTGAAGAAGAAGAAATTTTGAACTTGGAATTTGAAGAAAATTCTGTATTGTTCTGTTTATTTGATAATGATTTTAGTGTTGTGAAGAGTAGGAATGGAGGATTAGAAATGGAATTTGAGAGTGATTTTATGTTGGAAACTGTGAGATCTGAAGTTGAAAAAAGTTTCGCCATTTCAGTCACGCCGCTACACCGGAGCTTTCTTCTTGGAGCAATTGCCCAATTCAAAGCTTCAAATCTCCGTCCACACTTCGCGGCTAGAGTTCGGGCCGGCAGTGTAGTTTCAGAGATTGTAATGGAAGCGCCGCCGTTCTCCATCGCTGTTTCTTTTTCTTCTTCTTCTTCTCAATCTGTATTTCGATCACTTTCGTCGTTGTCTTATACCAGCTCCCTCATTTGTCTTCGCAACAATCGTTACAAAGGTCGTCATCTCAAAGTCAAGTGCTCCGGTAAGTTCGCAGTTCGTGCCTCATTTGGTGGTGACTCAGTTGTGACTTTACTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAAGACATTCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCTGCCATGGATGTGCTAAACAGTAAAGGCATGGCTGAAGCACTTTGCACTTATATTGAGAATGATCGCCCATTTTTAGGCATCTGTCTTGGGCTTCAACTACTCTTCGAGTCAAGCGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCTGGTGTGGTTGGACGTTTTGACTCTTCCAATGGTTTTAGGGTACCCCATATTGGGTGGAATGCTTTGGAAATCTCAAAGGACTCTGAGATATTGGATGAAATTTCTAACCGTCATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCAGACAAGAACAAGGATTGGATCTCTTCTACTTGCAGCTATGGTGACAGGTTTATAGCTTCAGTTAGAAGGGGAAATGTTCATGCAGTTCAATTCCACCCAGAAAAAAGTGGAGCTGTAGGTCTGTCTGTCCTACGAAGATTCCTGTTTCCAAAGTTGTCTGTGACCAAGAAGCCTACTGAGGGAAAGGCATCAAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGCGGACAAATGACCAAGGGGACCTTGTTGTTACCAAAGGGGACCAATATGATGTAAGGGAGCAGACAGAAGAGAATGAGGTGAGGAACCTTGGCAAGCCGGTAGAGCTTGCTGGACAGTACTACAAGGATGGTGCTGATGAGGTCAGTTTTCTGAATATAACTGGTTTCCGTGACTTCCCTCTTGGTGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGCGGGATTAGAGATTTTAAGGATGCAAATGGCAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTTAGATCTGGAGCTGATAAAATATCTATTGGAAGTGATACAGTTTATGCTGCCGAAGAATATTTAAGAACTGGCGTAAAGACCGGAAAGAGCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAACCAGGCTGTTGTGGTAAGTATTGATCCTCGTAGAGTGTACCTTAAAAGTCCCAATGATGTGGAGTTCAAAGTCATACGAGTAACAAACCCAGGTCCTAATGGAGAAGAGTATGCATGGTATCAATGTACAGTAAATGGAGGTCGAGAAGGTCGACCTATTGGCGCTTATGAGCTTGCAAAAGCAGTTGAGGAGCTTGGAGCTGGAGAAATACTGCTGAACTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATATAGATTTGGTAAAGCTGATATCAGATTCTGTGAGCATACCAGTTATTGCCAGCAGTGGTGCTGGCTCTCCTCACCATTTCTCTGAGGTCTTTAACAAAACGAATGCATCTGCTGCCCTCGCCGCTGGCATTTTTCATCGCAAGGAGGTGCCTATTCAGTCCGTAAAAGAGCATTTATTAAACGAAGGCATAGAAGTCAGAATCTAA 3156 45.69 MDWTRGPAVGRGSSATVYLATAASSGHQFAVKSTDLTSSALLQKEHALLSNLSSPYLIKCLGFDIETEALNPPVFNLFMEYSPEGTLWDAIQSNGGRMEESTIGVFSRQILKGLEYLHANGLAHCDIKSRNLLLSDEGLKIADLGCAKFVDEISGNGVGAFSGSPAFMAPEVARGEEQGFPADVWAFGCTVIEMATGDHPWPEMEDPVSALYRIGFSGELPEIPRWLSKGARDFVAKCLIKDPKERWTVKRLLEHPFLQGFDSESEIECSRMKTMNSSPNCVLDQSFWDSMEDLETPLKVTHQASMAGCPAERIRSLAGNLSSDWDLEWDDRDWVLIRNNGVGGGSHENGSVSSDIFASVEEEEILNLEFEENSVLFCLFDNDFSVVKSRNGGLEMEFESDFMLETVRSEVEKSFAISVTPLHRSFLLGAIAQFKASNLRPHFAARVRAGSVVSEIVMEAPPFSIAVSFSSSSSQSVFRSLSSLSYTSSLICLRNNRYKGRHLKVKCSGKFAVRASFGGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMAEALCTYIENDRPFLGICLGLQLLFESSEENGPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISKDSEILDEISNRHVYFVHSYRAMPSDKNKDWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGAVGLSVLRRFLFPKLSVTKKPTEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVASEYFRSGADKISIGSDTVYAAEEYLRTGVKTGKSSLEQISKVYGNQAVVVSIDPRRVYLKSPNDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIDLVKLISDSVSIPVIASSGAGSPHHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLLNEGIEVRI 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10487751 10510654 - CePI673135_09g010760.1 Cec09g1076 211586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1076 1051 NCBIfam imidazole glycerol phosphate synthase subunit HisF 739 1050 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Cec09g1076 1051 SUPERFAMILY Ribulose-phoshate binding barrel 738 1050 IPR011060 -
Cec09g1076 1051 Pfam Histidine biosynthesis protein 742 1033 IPR006062 GO:0000105(InterPro)
Cec09g1076 1051 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec09g1076 1051 Pfam Protein kinase domain 6 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec09g1076 1051 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Cec09g1076 1051 CDD GATase1_IGP_Synthase 523 721 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Cec09g1076 1051 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 522 723 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Cec09g1076 1051 FunFam Imidazole glycerol phosphate synthase hisHF 518 743 - -
Cec09g1076 1051 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 739 1051 IPR050064 GO:0000107(PANTHER)
Cec09g1076 1051 Gene3D Aldolase class I 743 1051 IPR013785 -
Cec09g1076 1051 SUPERFAMILY Class I glutamine amidotransferase-like 522 722 IPR029062 -
Cec09g1076 1051 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec09g1076 1051 CDD HisF 741 1045 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Cec09g1076 1051 NCBIfam imidazole glycerol phosphate synthase subunit HisH 523 721 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Cec09g1076 1051 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 522 730 - -
Cec09g1076 1051 SMART serkin_6 3 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec09g1076 1051 Gene3D - 520 742 IPR029062 -
Cec09g1076 1051 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Cec09g1076 1051 CDD STKc_MAPKKK 2 258 - -
Cec09g1076 1051 FunFam Imidazole glycerol phosphate synthase hisHF 741 1051 - -
Cec09g1076 1051 Pfam Glutamine amidotransferase class-I 525 720 IPR017926 -
Cec09g1076 1051 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0926 Cec-Chr2:12204173 Cec09g1076 Cec-Chr9:10487751 2.30E-83 dispersed
Cec04g1378 Cec-Chr4:33426970 Cec09g1076 Cec-Chr9:10487751 7.40E-63 dispersed
Cec04g1887 Cec-Chr4:37408096 Cec09g1076 Cec-Chr9:10487751 1.60E-83 dispersed
Cec09g1076 Cec-Chr9:10487751 Cec10g0455 Cec-Chr10:5435455 1.80E-11 dispersed
Cec09g1076 Cec-Chr9:10487751 Cec02g0212 Cec-Chr2:2047538 4.80E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72264 PF00977 His_biosynth 2.10E-44 CL0036 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1076 K01663 - csv:101205184 1093.57