Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1162 ATGGTTAATTCACACGAAATCCCTCCAATTCCACTACCTCAATTGGTAATTGAACTTCACAAACCAACAGAAAAGCGCGTGTTGTCTTTGTTTTTTTGTTTATCCATTAGAAACCACCGACAGTGGAGAGACAAAGATAGGTGGGTGTGGAGAAGAATGTATGGGGATTGCCAAGTGATGACAAGCAATATGGGAGGAAATATGGTTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAATTTCATGTCCAATTTTCAACATTTTCCTTCCATTGTTCCTAAGGAAGAAAATGGGTTGATGATGAGAGGAAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAACTTGTTGAAGAAAATCAAGGAATCGAAATGGAAAGTAATAATAATAATGATATTATTCAGCAAAATCAAAAGAAAAAACGCTATCATAGACATACCGCTCGCCAGATCCAAGAAATGGAAGCATTATTTAAGGAATGTCCACACCCAGATGACAAGCAAAGGCTAAAACTCAGCCAAGAACTTGGCCTTAAACCTCGCCAAGTCAAATTTTGGTTCCAAAATCGAAGAACCCAAATGAAGGCACAACAAGATAGATCTGATAATGTGATACTTAGGGCAGAAAATGAGAGCTTAAAGAATGAGAATTATAGATTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTAGGGGAACCAAGCTTGGATGAACAACAGCTTCGCCTTGAAAATGCAAGACTTAGAGATCAGTTAGAACAAGTTTGCTCCTTGACCACAAGATACACTGGTCGCCCAATCCAAGGGATGCCCTCCACAGCTCCTCTTATGCAACCATCTTTGGATTTGGACATGAACATATACTCAAGGCAATACACAGAAGCCATTGTTTCATCATCCGAAATGATGCCGTTGCCCTCGATGCTCCCGCCCGAGACCGCCCACTTTCCAGAGGGTGGCCTATTAATTGAGGAAGAAAAAACACTTGCAATGGAGCTTGCTGTTTCGTCCATAGCTGAGCTTGTGAAGATGTGTCGCTCGACCGAGCCTCTTTGGGTTCGAGACAGCGAGAACGGTAAAGAAATTCTAAATGTAGAAGAGCATGGGAGAATGTTTCCATGGCCACTGAACCTCAAACAACACTTGATCAATGAGTTTAGGACTGAAGCCACTCGCGATACTGCCGTTGTTATAATGAATAGCATCACTCTCGTCGATGCCTTTCTCGATGCCAACAAATGGATGGAATTATTTCCTTCCATTGTGGCCAAAGCAAAGACTGTGCAAGTCATTTCATCAAGTGTTTCAGGCCATGCCACTTCTTCCCTTCAGCTGATGTATGCAGAACTTCAGACTCTTTCTCCTCTAGTTCCGACGAGAGAAGCGCATTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGACCGTCGTTGATTTTCCGATCGACAGCTTCCATGACAGTCTTCAGCATTCGTTTCCCAGATATAGGAGAAAGCCCTCTGGCTGCATTATTCAAGACATGCCCAATGGATATTCTAGGGTTACATGGGTGGAGCATGCAGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTGCATAGTGGAATGGCTTTTGGGGCACATCGTTGGTTGGCTATCTTACAAAGACAATGTGAGAGAATTGCAAGTCTTATGGCTAGAAATATTTCTGACCTTGGAGTAATACCTTCACCAGAAGCAAGACAAAACCTAATGAAACTCGCACAAAGAATGATTAGAACTTTCTCAGTCAACATAAGCACATCAGGTGGGCAGTCGTGGACGGCGTTATCTGATTCTCCTGACGATACCGTTCGTATAACCACTCGAAAAGTCGTCGAGCCTGGCCAACCCAATGGGGTCATTCTTAGCGCTGTCTCGACCACTTGGCTTCCTTATCCTCACTATCGGGTCTTCGATCTTCTACGAGACGAACGACGTCGGTCTCAGCTGGAGGTTCTTTCCAATGGGAATTCCTTGCATGAGGTTGCTCACATTGCTAATGGCTCCCACCCTGGCAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGTTGCACTGACCAGTCCGGCAGTCTCGTCGTCTACGCAACGATTGACGTCGATTCGATTCAGTTAGCAATGAGTGGAGAAGACCCCTCTTGCATTCCTCTCCTCCCCATAGGGTTTTCCATTGTCCCTGCCATCGGGTCAACCGTCGGCGGACACCCAGCACCGCCACCCGAGGACGGTACAAAGAATGCCAACTCCAGCTGCCTCCTTACCGTTGGTTTGCAAGTTCTAGCCAGCACCATCCCGTCGGCGAAGCTCAACTTATCAAGTGTAACTGCCATCAACAACCACCTCTGTAATACGGTGCACCAGATCAACATCGCTCTCGGCAGCCCAGGTCGTCTTGAGAACGGCAATAACGTGGCCGAGCCGAATAATGCGCCGCAGCCGCCGCCGCCGCCCAAGCAATAA 2574 46.11 MVNSHEIPPIPLPQLVIELHKPTEKRVLSLFFCLSIRNHRQWRDKDRWVWRRMYGDCQVMTSNMGGNMVSSESLFSSPIQNPNFNFMSNFQHFPSIVPKEENGLMMRGKEDMESGSGSEQLVEENQGIEMESNNNNDIIQQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSLTTRYTGRPIQGMPSTAPLMQPSLDLDMNIYSRQYTEAIVSSSEMMPLPSMLPPETAHFPEGGLLIEEEKTLAMELAVSSIAELVKMCRSTEPLWVRDSENGKEILNVEEHGRMFPWPLNLKQHLINEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVAKAKTVQVISSSVSGHATSSLQLMYAELQTLSPLVPTREAHFLRCCQQNADEGSWTVVDFPIDSFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSDSPDDTVRITTRKVVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPAIGSTVGGHPAPPPEDGTKNANSSCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINIALGSPGRLENGNNVAEPNNAPQPPPPPKQ 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11617178 11627088 - CePI673135_09g011620.1 Cec09g1162 211672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1162 857 SUPERFAMILY Bet v1-like 608 826 - -
Cec09g1162 857 CDD START_ArGLABRA2_like 339 570 - -
Cec09g1162 857 FunFam Homeobox-leucine zipper protein HDG1 131 218 - -
Cec09g1162 857 SUPERFAMILY Bet v1-like 337 573 - -
Cec09g1162 857 SUPERFAMILY Homeodomain-like 133 203 IPR009057 -
Cec09g1162 857 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677(InterPro)
Cec09g1162 857 Gene3D - 130 213 - -
Cec09g1162 857 Pfam Homeodomain 145 200 IPR001356 GO:0003677(InterPro)
Cec09g1162 857 CDD homeodomain 145 203 IPR001356 GO:0003677(InterPro)
Cec09g1162 857 Coils Coil 201 221 - -
Cec09g1162 857 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec09g1162 857 Pfam START domain 345 571 IPR002913 GO:0008289(InterPro)
Cec09g1162 857 Gene3D - 380 569 IPR023393 -
Cec09g1162 857 SMART HOX_1 143 206 IPR001356 GO:0003677(InterPro)
Cec09g1162 857 ProSiteProfiles START domain profile. 335 574 IPR002913 GO:0008289(InterPro)
Cec09g1162 857 MobiDBLite consensus disorder prediction 837 857 - -
Cec09g1162 857 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 135 830 IPR042160 -
Cec09g1162 857 SMART START_1 344 571 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1810 Cec-Chr1:32538611 Cec09g1162 Cec-Chr9:11617178 1.00E-185 dispersed
Cec05g0211 Cec-Chr5:1719180 Cec09g1162 Cec-Chr9:11617178 7.80E-147 dispersed
Cec05g0954 Cec-Chr5:8315235 Cec09g1162 Cec-Chr9:11617178 1.80E-149 dispersed
Cec07g1431 Cec-Chr7:29884000 Cec09g1162 Cec-Chr9:11617178 2.40E-122 dispersed
Cec09g0197 Cec-Chr9:1760640 Cec09g1162 Cec-Chr9:11617178 4.00E-111 dispersed
Cec09g1162 Cec-Chr9:11617178 Cec10g0249 Cec-Chr10:2766106 5.60E-08 dispersed
Cec09g1162 Cec-Chr9:11617178 Cec06g0005 Cec-Chr6:119486 2.10E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30235 PF01852 START 1.80E-43 CL0209 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1162 - - - 0.0