Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1208 ATGGATTCACTTGATACTCCACCTCCACCACTTTCTGCACCGTCCAACATGGCGGTCGGAGGACAAACGGCGTATTCAAACACCATGTCCAACGCCAACAACAATGCCTCCTCCACGATTGGTCTCAATCAGCCTTCGACTCAAATGATGCCGCCTTCATCGCGATTTCCCTTCAACCCTGTGATCGCCCCTACATCCATGCCTTTGGATTCTCTCAACGTTTCTCCCTACGACGGATCGCATTCCGGCAATTTCAACGTTGATTCCGGGAAGAAAAGGAGAGGCCGGCCGAGGAAGTACGCGCCTGATGGTAACAACGTTGCCTTGGGTTTGGCACCTACCACTGTTACGTCTTCTCTTCCTCACGGGGATTTGAGCGTTACTCCTGATTCGGAGCAACCGGCCAGAAAAGCCAGGGGAAGGCCTCCGGGCTCCGGGAAGAAGCAGACCAATGCTCTTGGTTCAGGCGGCACTGGTTTTACTCCTCATGTCTTATTGGCAAAGCCTGGAGAGGATGTAGCAGCCAAAATTTTGTCCTTCTCACAGCAAGGACCACGAACTGTCTTTATTCTCTCTGCAAATGGTACTCTCAGTAATGCTACCCTTCGACACTCATCATCATCTGGTGGTTCCGTGTCATATGAGGGCCATTACGAGATCATCTCTCTGTCAGGCTCATTTTTGGTGTCGGAGAATAATGGAACTCGAAGTCGAACAGGTGGTTTGAGTGTGCTGCTGGCTGGATCAAATGGACAGGTTCTTGGTGGTGGAGTTGCAGGAATGTTAATGGCAGGTTCTCAAGTACAGGTGATTGTGGGAAGTTTTCTAGAGGATGATAAAAAAACAAACACAAGTATGCTGAACTCTGGATCTTCTTCTGCACCATCACAAATGATAAACTTTGGTGGTGGTGTAGCAGCAGCAGCAGCCAGCCCGCCGTCGTTAGGGGCATCGAGCGGAGAATCGTCTGCCGAAAATGGAGATAGCCCTCTTAATAATAATAGGCATCCTGGAATGTTCAATAATTCCAGCCAGCAAATCCACAATAATATTCAGATGTACCAACAATTATGGGCAGGCCAAACACAGCAGTGA 1095 49.32 MDSLDTPPPPLSAPSNMAVGGQTAYSNTMSNANNNASSTIGLNQPSTQMMPPSSRFPFNPVIAPTSMPLDSLNVSPYDGSHSGNFNVDSGKKRRGRPRKYAPDGNNVALGLAPTTVTSSLPHGDLSVTPDSEQPARKARGRPPGSGKKQTNALGSGGTGFTPHVLLAKPGEDVAAKILSFSQQGPRTVFILSANGTLSNATLRHSSSSGGSVSYEGHYEIISLSGSFLVSENNGTRSRTGGLSVLLAGSNGQVLGGGVAGMLMAGSQVQVIVGSFLEDDKKTNTSMLNSGSSSAPSQMINFGGGVAAAAASPPSLGASSGESSAENGDSPLNNNRHPGMFNNSSQQIHNNIQMYQQLWAGQTQQ 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12615860 12619932 + CePI673135_09g012080.1 Cec09g1208 211718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1208 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 330 IPR039605 GO:0003680(InterPro)
Cec09g1208 364 MobiDBLite consensus disorder prediction 310 343 - -
Cec09g1208 364 MobiDBLite consensus disorder prediction 16 54 - -
Cec09g1208 364 MobiDBLite consensus disorder prediction 110 126 - -
Cec09g1208 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
Cec09g1208 364 Gene3D - 162 291 - -
Cec09g1208 364 ProSiteProfiles PPC domain profile profile. 157 297 IPR005175 -
Cec09g1208 364 MobiDBLite consensus disorder prediction 1 162 - -
Cec09g1208 364 MobiDBLite consensus disorder prediction 315 343 - -
Cec09g1208 364 CDD DUF296 161 275 IPR005175 -
Cec09g1208 364 MobiDBLite consensus disorder prediction 66 86 - -
Cec09g1208 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1208 Cec-Chr9:12615860 Cec11g1942 Cec-Chr11:33528232 3.80E-38 dispersed
Cec10g0178 Cec-Chr10:1741462 Cec09g1208 Cec-Chr9:12615860 5.00E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1208 - - - 0.0