Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1218 ATGGCTTCCATTAAACAAATTCTTGGCGAACTGGATAACGAATCCTTTGTCTCTTTACTCTCCAAACTCATCGGCGAAGCCAAGTTCGTCCAGAACAACCCAAAGGAAAACCTGATTCCTCAAGAAGACAAGATCGTCAATCACGTCCTTGATGTTCTTAACCCTTACAGCACCGCCAATGGCGGACCCTTGCTAATCAACCATGTCAGCTACGCTCCTGGCCGTGGAAATTTGGTTGTGGAGTATCCTGGGACTGTATCTGGAAAAGTAGTCTCCTTCGTCGGTAGTCACATGGATGTCGTCCCTGCCAATCCCGATACTTGGAAATTTTCTCCATTCTCATTGAGTGTTGATGGGGATCAACTTCGGGGTCGTGGGACTACTGATTGCCTTGGACATGTTGCCCTTCTAACTGAACTCCTCAAGAAGCTTGCACAAACTAAACTAAAGTTGAAGTCTTCTGTTGTTGTTGTATTTATTGCCTCTGAAGAGGATAATTCAATCCCAGGAATTGGAGCTGAACAACTTGCTAAAGAGGGATACTTCAATAATTTAAAAGGAGGGCCACTATACTGGATTGATACAGCAGATTCACAGCCTTGTATTGGTACTGGAGGTTCAATACCTTGGAAACTTGTAGCCAATGGAAAACTTTTCCACAGTGGTTTGGCACACCAGGCTATTAATGCTATGGAGTTAGCTATGGAAGCTCTTAAAGTGGTCCAATTACGCTTTTATGAAGATTTTCCTCCCCATCCTAAGGAACAGGTATATGGATTTGCATCACCATCAACCATGAAACCGACCCAATGGATTTATCCGGGAGGTGGTCTAAATCAAATTCCTGGAGAATGTACTATTTCGGGAGATGTCAGGTTAACCCCCTTCTACGATGTGAAGGATGTTATGACAAAACTCCAAGGCTATGTTGATTACATTAATGCAAACATTGAGAAACTTGATACGAGGGGCCCTGTTTCAAAGTATGTCCTACCAAATGAAAACATCAGGGGAAGAATCGACATAACTTTCGGTGAGCCGATGTCGGGAGTTGCATGCGATCTTAATTCTCGTGGTTATAAAGTTTTACATAATGCAACAAAGGAAGTTATAGGGCATGTCAAACCTTACTCACTTACAGGGAGTTTGCCGGTTATTCGGGAACTCCAGGAGGAGGGTTTTGATGTTCAGACTGCAGGCTACGGTTTATTAGATACATACCATGCCCAGAATGAGTATTGTCTTCTCAGTGATATGGGCAATGGCTACAAGATTTTTGTCAGCATCATCTCTCAATTAGAAGAAGATTGA 1311 43.02 MASIKQILGELDNESFVSLLSKLIGEAKFVQNNPKENLIPQEDKIVNHVLDVLNPYSTANGGPLLINHVSYAPGRGNLVVEYPGTVSGKVVSFVGSHMDVVPANPDTWKFSPFSLSVDGDQLRGRGTTDCLGHVALLTELLKKLAQTKLKLKSSVVVVFIASEEDNSIPGIGAEQLAKEGYFNNLKGGPLYWIDTADSQPCIGTGGSIPWKLVANGKLFHSGLAHQAINAMELAMEALKVVQLRFYEDFPPHPKEQVYGFASPSTMKPTQWIYPGGGLNQIPGECTISGDVRLTPFYDVKDVMTKLQGYVDYINANIEKLDTRGPVSKYVLPNENIRGRIDITFGEPMSGVACDLNSRGYKVLHNATKEVIGHVKPYSLTGSLPVIRELQEEGFDVQTAGYGLLDTYHAQNEYCLLSDMGNGYKIFVSIISQLEED 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12841443 12851658 - CePI673135_09g012180.1 Cec09g1218 211728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1218 436 PANTHER ACETYLORNITHINE DEACETYLASE 5 433 IPR050072 -
Cec09g1218 436 SUPERFAMILY Bacterial exopeptidase dimerisation domain 206 316 IPR036264 -
Cec09g1218 436 Pfam Peptidase dimerisation domain 202 314 IPR011650 -
Cec09g1218 436 Gene3D Zn peptidases 10 435 - -
Cec09g1218 436 SUPERFAMILY Zn-dependent exopeptidases 12 433 - -
Cec09g1218 436 Gene3D - 211 321 - -
Cec09g1218 436 Pfam Peptidase family M20/M25/M40 94 431 IPR002933 GO:0016787(InterPro)
Cec09g1218 436 FunFam Acetylornithine deacetylase, putative 10 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1218 K01438 - - csv:101220069 812.372
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1215 Cec-Chr9:12738714 Cec09g1218 Cec-Chr9:12841443 5.30E-183 dispersed
Cec09g1217 Cec-Chr9:12795021 Cec09g1218 Cec-Chr9:12841443 3.60E-200 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g662 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0458 . . . . . . . . . . . . . Bma12g00203 . . . . . . . . . . . . . . . . Cla09g01145 Cam09g1204 Cec09g1218 Cco09g1245 . . Cre09g1165 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001796 0 4 1 1 1 3 2 2 2 3 2 2 1 3 3 2 2 1 3 2 2 1 2 4 4 3 3 2 5 1 67