Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1282 ATGGTGGACTATAGTTTGCCGGTATCGAAGAGAACCAGGCTGAGGCGAGCAATGGCCGGAATGGAGGATTTGGAGCAGAGGAAGAAGAGGAGGAAGAAGAGCAGGACGGATTCCTCCAGTGACAATGTTCGAGGTCAGGCTTCGAGCGGTAAGAGGGTTAATGATTTTGAACATTCTAGTGTTAATCGTACAATGGAGGTGAATCCTGTTCGTTTATATGATGATAGTGAGGGAGATAGTTTAGAGGAGATTGATGCGGTAGCATTTGGTAGAGAAGGTGGGGATTCAGTCACATTTGTAGGTTCTGAGAGTTCGGGGCTAAAGAATGTGAAAGAATGTAGTACGAAGGGGTTTCAGAAAGGGAATATTGATTTAATTGATTTAGAAAATGAAGTGATTTTGTCAGATGATGAGGAGGGTTTTGGTTTTGATTCTGTAAATTCCATGTGTTCAATTTCTAGGTCTGCTACTGCTGCTGCCTCCAAGGATGGGGGTTTTGTTAGCTTTGATTTGGACAATGAGGACGATAGTAGTGGCTTGCTCTCTTCTGGCAAGGGTAAAGATACTTTTGAGATATCTCCTGATAAAAGCACTGGGGGAAGTGATTGCTTGAACTCGAATGGTTGCGAGAGTGGTGGTTGCTCATACAAGACTGAGCCCACGTTTAGTTCTGATGAAGCTGTAGATGATTCCACTGAATTGGGAGCATCATCAAGTGAAGAGGAGTTTGATGACTCCAGTGATAGAAATTACGAATTAGAAGAATCAGACGGGGCAATTTCAGAGTCCTCTAGTTCAGAAGATGGGAAAAGTAATGGAAGTTACTGTGCAGAAGTAAGAAATAAAAGGGAGAGGAAGGAAAGAAGGACAGGTGGAAATTTGATTGAAGGTGGACTAAGGAGGAGGAAAGCGTATGGCTTAGACATATTGGTTGAATTTGACAAGGACGGAAATAACAAAAATGTTAAGGTTGGTGAACAAGTTAACTGTATTGCACGAAGAACTCGTTCACGCTTTGGTTTTAGGGTCAGGAAAATAAATACTGATCTTGGAACTGTCAGTCAGCCACTCTGTATTGACGAGGAAGGGTCAGAGTTTCAGTGTGATGAGAAAGAATTAGATTCTTCATCAAGGCATGGCAGTGGAGATTCTTGTGATAGTGATAGTACTACTGATGATGAAGTTTACAAGCCATGGGCCTGGAGTAGTAGTAAAAAGAGAACTCGGTTCAACAATCAAAGTGATGATGATTTCTCATCGGAAAAAAAAGATGATGATACAAACAAGGTTGAGAGTTTTCACGTGGGGAGTAAACTTTGGAATAGTAAAAGTTCACCTGAAACTAATAAACACCACCAGAGTGAAGATTTTCAGAAGGTTCGTCCAAAGAATGGCCATGAGTTTCATGATGTTATTAAAACAAAAGGCCGCAGTACTCCAAGAGGTATTGATGTTTTCAATATTCTTATAGATTCCATAATTGCGGACAAAGAACTGCCTTCAGATGAGTTAGATCCTCCTACAAGTCAAGTCTCCCATATGCCTCTTCCTTTGAAGTTTGGATTGATGGAACCACCTCTTCCAGAGAAGTCAGAGGAAGAAAAAGAATTGGATAAACTCTGGGCAGAGCTTGACTTTGCTCTCAGATCCAGCAAGATCGGGCTGGTGGATTCTAATACAGTTGAACACGAAGATGCTTTTCCTTCAAAGCTTGAGCAAGTAGATCTGTGTCTTCGCGGTTATCATCAGCTCATACTTGATGAACAAATTGGACTTAGATGCAGATGCTGTTCGTATGTCCAATTGGAAATCAGAGATATTGTACCTTCTTTTGATACAAATCCACATGGAAAGTCACAGAAGAGGGAATCTGGCTCATTTGAGAACGTTAAATATGATGACCTTCAAGAGGATTTTGATTGTGACCACCGTGATGGATCCGATTCACGATCTCATTTTGGACGCACAGTGTGGGATATCATTCCTGGTATAAGGAATAGCATGTACCCACACCAGCGTGAAGGCTTTGAATTTATTTGGAAAAATATAGCCGGAGGAATTTATCTTGATGAGTTGAGAGATAAAAACAGCTTAAACAATGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTAACAATTAATTTTCTTCAGACATACATGGAATTAAATCCAACATGCCGTCCAATGATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGAATGTTGGCATTCCCTTTCATAACCTGAATAAGCGAGATTTCTCTTTCGAGGAGAATATTTCAGCCCTTAAGTTCTTGATGCAAGCTTCTCCATCAGGACAAAATGTGGACAACATACGGCTTGTAAAACTGTTTTCCTGGAAAAAGGAGAAAAGCATCTTGGGAGTTAGTTACAGATTGTTTGAAAGATTAGCTGGAGTTCGAAAGAATTCTAAATGTGATAAAGTAAGGAATGTCCTTTTGGAGCTCCCTGATCTTGTGGTCTTTGATGAAGGGCACATTCCACGCAACGATGATAGTCTTATTTGGATGGCTTTGTCTAAAATTAAAACAGAAAGGCGCATTATCCTCTCTGGAACTCCATTCCAGAACAATTTTACTGAATTTTACAATACACTTCGGTTGGTGAGGCCAAACTTTGCAGATGAAAGTAATTCTGGAGGCGATGAATGCATGGATAAGAAGCGTGGACGACCAAAAAATATCTCAAGAGGAAAGTGGGACCTTTTGATTAGTTCCATTGGCAGAACTTCTGAACTGGAAAGTGCTGAATTGAAAGAAATCAGAGCTTTGATCAATCCATTTGTGCATGTGTACAGGGGCAGCATACTACAGGAGAAACTTCCAGGGTTGAGGAAATCTACAGTTATATTATGGCCAGCAGAGCTGCAGAAGAGTTTTCTTGAGAGAATTCAAGCAAGGAAGCATTCTTTTGAAGTGGAATATGTTGAGTCCTTGATCTCCGTACACCCTTCTTTGATACTGAAATGTGATAAAGGAGATTGTGAGGTTGACAAGGATATGTTAGAGAGGTTTAGATTGAATCCTGAACTTGGAGTGAAACTACAGTTTCTCCTGGAAATTATACGTCTCAGTGAAGCTTTGAATGAAAAAGTTTTGGTTTTCAGCCAATATATTGAACCATTGTCCTTTATAGAAGAGCATCTTAAGTTTCATTTTAAATGGACTGAAGGGATAGAGTTGTTTCATATGGATGGAAAACGTGAGATAAAGAAACGACAAGCATTAATAAATACCTTTAATGATCCAACAAGTGAAGTTAGGGTATTGCTTGCATCTACAAAGGCTTGCTCGGAAGGTATAAACCTTATTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCCTCGGTGGAAAGGCAAGCCATATGCCGAGCGTATAGACTTGGGCAGAAGAAGGTTGTTTATGTCTATCATCTCATTACCTCTGGGACAAGGGAAGAAGAGAAATACAGTCGACAAGTGGAAAAAGATCGACTGTCTCAGTTAGTTTTTTCTTCTGAACAGAACAGTAATGAAGTCAAAGTATCATCCACAGATCTAGATGACAGAATTTTGGAAGCTGTACTTCAACATGAAAAGCTTAAAAAGATATTCCAAAAGATAATATACCAATCAAAGGAGTCCTGCATGAATGAGAATTTTGGCTTGGCAGACAAGGAGTGA 3732 40.3 MVDYSLPVSKRTRLRRAMAGMEDLEQRKKRRKKSRTDSSSDNVRGQASSGKRVNDFEHSSVNRTMEVNPVRLYDDSEGDSLEEIDAVAFGREGGDSVTFVGSESSGLKNVKECSTKGFQKGNIDLIDLENEVILSDDEEGFGFDSVNSMCSISRSATAAASKDGGFVSFDLDNEDDSSGLLSSGKGKDTFEISPDKSTGGSDCLNSNGCESGGCSYKTEPTFSSDEAVDDSTELGASSSEEEFDDSSDRNYELEESDGAISESSSSEDGKSNGSYCAEVRNKRERKERRTGGNLIEGGLRRRKAYGLDILVEFDKDGNNKNVKVGEQVNCIARRTRSRFGFRVRKINTDLGTVSQPLCIDEEGSEFQCDEKELDSSSRHGSGDSCDSDSTTDDEVYKPWAWSSSKKRTRFNNQSDDDFSSEKKDDDTNKVESFHVGSKLWNSKSSPETNKHHQSEDFQKVRPKNGHEFHDVIKTKGRSTPRGIDVFNILIDSIIADKELPSDELDPPTSQVSHMPLPLKFGLMEPPLPEKSEEEKELDKLWAELDFALRSSKIGLVDSNTVEHEDAFPSKLEQVDLCLRGYHQLILDEQIGLRCRCCSYVQLEIRDIVPSFDTNPHGKSQKRESGSFENVKYDDLQEDFDCDHRDGSDSRSHFGRTVWDIIPGIRNSMYPHQREGFEFIWKNIAGGIYLDELRDKNSLNNGSGCIVSHAPGTGKTRLTINFLQTYMELNPTCRPMIIAPSSMLLTWEEEFLKWNVGIPFHNLNKRDFSFEENISALKFLMQASPSGQNVDNIRLVKLFSWKKEKSILGVSYRLFERLAGVRKNSKCDKVRNVLLELPDLVVFDEGHIPRNDDSLIWMALSKIKTERRIILSGTPFQNNFTEFYNTLRLVRPNFADESNSGGDECMDKKRGRPKNISRGKWDLLISSIGRTSELESAELKEIRALINPFVHVYRGSILQEKLPGLRKSTVILWPAELQKSFLERIQARKHSFEVEYVESLISVHPSLILKCDKGDCEVDKDMLERFRLNPELGVKLQFLLEIIRLSEALNEKVLVFSQYIEPLSFIEEHLKFHFKWTEGIELFHMDGKREIKKRQALINTFNDPTSEVRVLLASTKACSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYVYHLITSGTREEEKYSRQVEKDRLSQLVFSSEQNSNEVKVSSTDLDDRILEAVLQHEKLKKIFQKIIYQSKESCMNENFGLADKE 1243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15097639 15103065 + CePI673135_09g012820.1 Cec09g1282 211792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1282 1243 Gene3D - 645 922 IPR038718 -
Cec09g1282 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1191 IPR027417 -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 448 466 - -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 220 234 - -
Cec09g1282 1243 CDD SF2_C_SNF 1031 1163 IPR049730 -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 1 61 - -
Cec09g1282 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 895 IPR027417 -
Cec09g1282 1243 Pfam Helicase conserved C-terminal domain 1034 1152 IPR001650 -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 15 39 - -
Cec09g1282 1243 Gene3D - 967 1236 IPR027417 -
Cec09g1282 1243 SMART ultradead3 664 918 IPR014001 -
Cec09g1282 1243 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 695 892 IPR014001 -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 369 394 - -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 220 289 - -
Cec09g1282 1243 SMART helicmild6 1063 1152 IPR001650 -
Cec09g1282 1243 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1040 1204 IPR001650 -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 409 466 - -
Cec09g1282 1243 Pfam SNF2-related domain 671 988 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cec09g1282 1243 MobiDBLite consensus disorder prediction 409 432 - -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 177 202 - -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 235 251 - -
Cec09g1282 1243 MobiDBLite consensus disorder prediction 257 272 - -
Cec09g1282 1243 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 11 1230 IPR044567 GO:0080188(InterPro)
Cec09g1282 1243 MobiDBLite consensus disorder prediction 40 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1282 K10875 - - csv:105435045 1946.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g0529 Cec-Chr7:6264329 Cec09g1282 Cec-Chr9:15097639 2.10E-99 dispersed
Cec09g1282 Cec-Chr9:15097639 Cec11g0427 Cec-Chr11:4471014 7.50E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30246 PF00176 SNF2_N 1.20E-19 CL0023 Cec TR