Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec09g1296 | ATGGAGCTCTCACTTAAATGTGGCTTTTTTGGCTGCCTCTTGCTTGTGCTCTTGCCTGTGCTGTGCTTCTCTCAAGACAATTTTGTTTACTCTAGAGCCACTTATTATGGTAGCCCTGATTGCTATGGAACACCATCTGGGGCCTGTGGATTTGGTGAATTTGGAAGAACTGTGAATGATGGCAATGTTGCTGCAGTTTCCTATCTCTATAGAAATGGTTCTGGTTGTGGTGCATGTTACCAGGTTAGGTGCACCAATCGAAAATATTGTAGTGGTAGTGGAGCCTCTGTAGTGGTGACAGACCATGGTGAAGGTGATTACACTGACTTTATATTGAGCCCAAAAGCGTATGCGAAAATGGCTCATCCAAACACAGCCTTAGAATTGTTCTCATATGGTGTTGTTGATGTTGAATTCAGAAGGGTTTCTTGCCAATACCCTAATTACAATACTCTCAAATTCAAGGTTCATGACAATAGTAGATACCCTGATTATTTGGCCATTCTTATCATTTATGTTGCTGGAAAAAATGATATCACTGCTGTTGAGTTGTGGCAGGAGGATTGCAAAGAATGGAAGGGGATGAGGAGATCCCATGGAGCTGTTTGGGATATGGCAAACCCTCCTAAAGGAGACATAAAATTGAGGTTTCAAGTGAGTGGAAGTATGGGATATGGAAGGTGGGTGGTTGCAAACAATGCTCTCCCAAGCTATTGGAAGGCAGGAGTTGCTTATGACACTGACATTAACCTCTATTAA | 759 | 42.42 | MELSLKCGFFGCLLLVLLPVLCFSQDNFVYSRATYYGSPDCYGTPSGACGFGEFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNRKYCSGSGASVVVTDHGEGDYTDFILSPKAYAKMAHPNTALELFSYGVVDVEFRRVSCQYPNYNTLKFKVHDNSRYPDYLAILIIYVAGKNDITAVELWQEDCKEWKGMRRSHGAVWDMANPPKGDIKLRFQVSGSMGYGRWVVANNALPSYWKAGVAYDTDINLY | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 15665552 | 15669672 | - | CePI673135_09g012960.1 | Cec09g1296 | 211806 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec09g1296 | 252 | Gene3D | - | 145 | 248 | IPR036749 | - | |
| Cec09g1296 | 252 | Pfam | Lytic transglycolase | 66 | 138 | IPR009009 | - | |
| Cec09g1296 | 252 | Gene3D | - | 21 | 144 | IPR036908 | - | |
| Cec09g1296 | 252 | PRINTS | Expansin/Lol pI family signature | 132 | 148 | IPR007118 | GO:0005576(InterPro) | |
| Cec09g1296 | 252 | PRINTS | Expansin/Lol pI family signature | 192 | 206 | IPR007118 | GO:0005576(InterPro) | |
| Cec09g1296 | 252 | PRINTS | Expansin/Lol pI family signature | 66 | 84 | IPR007118 | GO:0005576(InterPro) | |
| Cec09g1296 | 252 | PRINTS | Expansin/Lol pI family signature | 233 | 247 | IPR007118 | GO:0005576(InterPro) | |
| Cec09g1296 | 252 | PRINTS | Expansin/Lol pI family signature | 27 | 42 | IPR007118 | GO:0005576(InterPro) | |
| Cec09g1296 | 252 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 46 | 149 | IPR007112 | - | |
| Cec09g1296 | 252 | SUPERFAMILY | Barwin-like endoglucanases | 13 | 148 | IPR036908 | - | |
| Cec09g1296 | 252 | SUPERFAMILY | PHL pollen allergen | 151 | 246 | IPR036749 | - | |
| Cec09g1296 | 252 | PANTHER | EXPANSIN-B3 | 13 | 250 | - | - | |
| Cec09g1296 | 252 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 164 | 247 | IPR007117 | - | |
| Cec09g1296 | 252 | Pfam | Expansin C-terminal domain | 153 | 236 | IPR007117 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec09g1256 | Cec-Chr9:14230134 | Cec09g1296 | Cec-Chr9:15665552 | 3.10E-55 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec09g1296 | - | - | - | 0.0 |