Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1299 ATGGGAAAGCATGGGCCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCTGATAAACCAGTACTATGTAATGCCTGTGGATCCCGATGGAGGACCAAAGGAACACTTGCAAACTATACCCCTTTGCATGCTCGGGCCGATCCCGATGAATATGTAGATCACAGGGTTTCCAGGGTGAAGAATATTTCAATAAATAAAAACAAAGAAGTTAAACTGCTTAAAAGAAAGCTGCAACAAGCAGATGGATCAATTGGGTGGATGATTCCCGACCAAGGCCAGGGTTACCATAGAGTAGTGGATGAAGATACGAGCAATAGATCCAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGAGGACCTGTGTAAATCGTCCAAAGCAGTCCCCAGTTGAAAAACTAACTAAAGATCTATATACTATCTTACGTGAGCAGAGATCATCCTACTTCTCCGAAGCTTCCGAGGATGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGCATTCTCATTAGGCATCCAAGTTCGATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCAACATCTAGGACTGGAAAGATGAAGAATCCATATGGATCAGGAGTACAGCAAGAACAAATTAAAAGGGACAACTCTCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTATGTGATGTAGATATAAAGGACATTATAAACTTTGGAGAGTTTGCGAGACAACTGACAAATGAAGAACAACAGCAATTAATGAAGTACCTACCGCAGGTTGATATTGCTGAATTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAATTTAACTTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTCGATGTTTCCTTCCTTGGAACAAAGATCGAAGACTGCAAGACTCTTAAAAGGCTTGTATTGTATAATTCTTCAAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAAGATAAAAATGGTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCATGAATGTTAAGCAATTGCGTGAGAGCTACAACCAAAATATTTCAGAGGTAAAGACCATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTTGTGGAAGAAAGTTCAGATCAAGATCTATTGCTAGATGTACGATCGAATAGTTCATTCCCGCAAGCCGAGCTCCTTCACCCGTCCTCTCATTCTGGTGGTAGGCAGGCTAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1626 42.87 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYVDHRVSRVKNISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYTILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQCLVNEVYSPHSTTVLVCSENKGMNFPTSRTGKMKNPYGSGVQQEQIKRDNSHHECLQILGNHNSPLCDVDIKDIINFGEFARQLTNEEQQQLMKYLPQVDIAEFPETLKSMFDSPYFKENLTSFQQLLSEGVFDVSFLGTKIEDCKTLKRLVLYNSSKSKWVERYHQLKKDKNGSKGPFLSHANASVSSNFMNVKQLRESYNQNISEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPSSHSGGRQASTCSSSVHPHLVHH 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15775558 15781347 - CePI673135_09g012990.1 Cec09g1299 211809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1299 541 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g1299 541 MobiDBLite consensus disorder prediction 513 535 - -
Cec09g1299 541 MobiDBLite consensus disorder prediction 513 541 - -
Cec09g1299 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g1299 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Cec09g1299 541 Gene3D - 294 385 IPR038108 -
Cec09g1299 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 372 IPR044589 -
Cec09g1299 541 Pfam Asx homology domain 286 370 IPR028020 -
Cec09g1299 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g1299 541 Gene3D - 4 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec09g1299 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Cec09g1299 541 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec10g0229 Cec-Chr10:2524327 Cec09g1299 Cec-Chr9:15775558 8.00E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30247 PF13919 ASXH 3.70E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1299 - - - 0.0