Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1450 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTCAGTGCAGGTCAATTACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCTGGGACTCCTGCTATTACAATTCCCCCAACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTACCAGCAGGCTCAGCACTTCCACCACCAGCAACAGCAGCAGCAGCAACAACAGCTCCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTTAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATTATGAAAGCAGACGAAGACGTAAGAATGATTTCAGCTGAAGCACCAGTTATATTCGCGAAGGCATGTGAAATGTTCATCTTGGAGTTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACTGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTTGGAATCACGAAAGGTTCCATTCCCGTAGTTGGTTCCCCAGCTGATCTTCCTTATTACTATGTTCCATCCCAGCATCCAGTGGGTGCTACAGGGATGATCATGGGGAAGCAATTAGATCAAGCGAACATGTACGGTGCCACCGCTCAACACCCCCGACCATCGATGCCTTTCATGCCATGGCCGCATACTCAACCTCAGCAGCAGCAACAAACTCAGCAGCAAAGTGATGCATAG 801 46.44 MDQSERSQHQQQSQQPAGGVSAGQLPYSNPYQTAPMVASGTPAITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKGSIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQHPRPSMPFMPWPHTQPQQQQQTQQQSDA 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21685224 21686024 - CePI673135_09g014500.1 Cec09g1450 211960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1450 266 MobiDBLite consensus disorder prediction 250 266 - -
Cec09g1450 266 Pfam Core histone H2A/H2B/H3/H4 56 166 IPR007125 GO:0003677(InterPro)
Cec09g1450 266 MobiDBLite consensus disorder prediction 55 76 - -
Cec09g1450 266 MobiDBLite consensus disorder prediction 236 266 - -
Cec09g1450 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 251 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cec09g1450 266 SUPERFAMILY Histone-fold 59 175 IPR009072 GO:0046982(InterPro)
Cec09g1450 266 MobiDBLite consensus disorder prediction 1 39 - -
Cec09g1450 266 MobiDBLite consensus disorder prediction 1 76 - -
Cec09g1450 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982(InterPro)
Cec09g1450 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1748 Cec-Chr3:35814002 Cec09g1450 Cec-Chr9:21685224 5.30E-30 dispersed
Cec06g1985 Cec-Chr6:33124283 Cec09g1450 Cec-Chr9:21685224 9.60E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30253 PF00125 Histone 6.00E-18 CL0012 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1450 K08066 - csv:101213813 417.157