Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1638 ATGTGCCTAAATAAAAGGGAGGCCAGCGTAGACAAGCCAACCCCAAAGGCCTTACCAAAAGCTACTCAAGGAGGGAAACAAAAGGCACGCGTCTTTGCACTAAAGAAAGAGGAGGCTGAAGATATGAACGCAATGGTTTCAGCGCCTTATTATCAAATGATCTGTGGAGAGATGAGAAGCAATGAAATGGGGAGAGCAACGTTGATGTTTTTTTCTCCTTTCCTGCGCTTAATTTTGGCTATGGCTTTCGTTTTACTGGTGTCTGCAAATGGGGAAGGTGATGCCCTAAATGCCTTCAAGATGAGTTTGGTTGACCCCAACAATGTCTTGCACAGTTGGAATACCATTCTTATGAATCCTTGCACATGGTTTCATGTTACATGTGATGAAAAAGAAAGTGTTATACGTGTTAATCTTGGTAATGCCAATCTGTCTGGAAAACTGGTTCCACAGCTTGATCAACTCACAAATTTGCGGTACTTGGAACTCTACAGCAATAATATCAGCGGAACAATTCCAGAAAGATTTGGAAATTTGAAAAACTTGGAGAGCTTGGATCTTTATTCTAACAGTTTAACTGGTCCCATACCTGACACACTGTGCAAACTTACAAAACTAAGTACCTTGCGTCTGAACAACAATAGCTTATCAGGAACCATTCCAATGTCTTTAACCACTGTTCCACTTCAACTTCTGGATCTTTCAAATAACCTTCTAACAGGAGACATTCCTGTCAATGGTTCGTTCTCTCTTTTCACACCAATCAGTTTTGCCAATAATCCTCTTCACATTTCTCCCTCTGCTCCTCCTCCGCCAACGAGAGATACACCACGAACATCTTCAGGTGATGGGGCTAATGGAGTCATTGTTGGAGCAATTGTTGCTGCTGCTGCTTTGCTGGTTGTTGTGCCTGCTACTGCAGTTAATCTTTGGCGACGAAAAACTCGAAAGGACCACTTCTTTGATGTGGCTGCTGAAGAAGATCCTGAAATTAAACTGGGCCAGCTCAAAAAATATTCCCTGCGCGAGCTGCAAGTTGCCACTGATTATTTTAGCCAACAGAACATTTTGGGCAAAGGTGGATTTGGCAAGGTCTATAAAGGTCGTTTGGCTGATGGTTCTCTTGTGGCTGTAAAACGATTGAAGGAGGAGCCTGCTGAGGTTGGAGAGCTTCAATTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTCCATCGTAATCTACTCCGTCTAAATGGATTTTGCATATCACCAACTGAACGATTGCTTGTCTATCCTTATATGGCTAATGGAAGTCTAGCATCATGTTTAAGAGAGCATAAGCAATGCCAGCCACCACTCAACTGGGAAATACGTAAACGAGTTGCTATAGGGGCTGCACAGGGACTTGAATATTTACATAAGCATTGTGATCCTAAAATTATTCACCGTGATGTGAAAGCTGCAAATATATTACTAGATGATGAATTTGAGGCTGTTGTTGGAGATTTTGGATTGGCTAAACTCATGAACTACAAGGATACTCATGTCACAACTGCTGTTCGTGGAACAATTGGGCATATAGCGCCAGAGTACCTCTCGTCTGGAAAGTCTTCTGAAAAATCTGATGTTTTTGGTTATGGAGTAATGCTTCTTGAACTCGTAACTGGACAGAAAGCCTTTGATCTTGCTCGGTTAGCAAAAGATGATGACATCATGTTACTTGATTGGGTAAAAGGACTTCTGAATGATAAGAAACTGGAAACGTTGGTCGATCCCAATCTCGGAGGCAATTACGTAGAGGAAGAACTGGAGCAGGTAATTCAAGTTGCACTGCTTTGCACGCAAAGCTCCCCTGTGGAGCGACCAAAGATGTCGGAGGTGTTGCAAATGCTGGAAGGAGATGGTTTGGCTGAAAGATGGGAAGAATGGCAGAAAGAAGAGAGCTCACGCCGAAACTTCAATAATATGGTTCATTCTTCCCACCACCGGAGTAGAACTCCCCAGTTTATTGATTCCACTTCTCATATTGCTCCTGATGTGTTGTCTGGTCCAAGATAG 2040 42.84 MCLNKREASVDKPTPKALPKATQGGKQKARVFALKKEEAEDMNAMVSAPYYQMICGEMRSNEMGRATLMFFSPFLRLILAMAFVLLVSANGEGDALNAFKMSLVDPNNVLHSWNTILMNPCTWFHVTCDEKESVIRVNLGNANLSGKLVPQLDQLTNLRYLELYSNNISGTIPERFGNLKNLESLDLYSNSLTGPIPDTLCKLTKLSTLRLNNNSLSGTIPMSLTTVPLQLLDLSNNLLTGDIPVNGSFSLFTPISFANNPLHISPSAPPPPTRDTPRTSSGDGANGVIVGAIVAAAALLVVVPATAVNLWRRKTRKDHFFDVAAEEDPEIKLGQLKKYSLRELQVATDYFSQQNILGKGGFGKVYKGRLADGSLVAVKRLKEEPAEVGELQFQTEVEMISMAVHRNLLRLNGFCISPTERLLVYPYMANGSLASCLREHKQCQPPLNWEIRKRVAIGAAQGLEYLHKHCDPKIIHRDVKAANILLDDEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSSGKSSEKSDVFGYGVMLLELVTGQKAFDLARLAKDDDIMLLDWVKGLLNDKKLETLVDPNLGGNYVEEELEQVIQVALLCTQSSPVERPKMSEVLQMLEGDGLAERWEEWQKEESSRRNFNNMVHSSHHRSRTPQFIDSTSHIAPDVLSGPR 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29586358 29612825 - CePI673135_09g016380.1 Cec09g1638 212148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1638 679 FunFam Somatic embryogenesis receptor kinase 1 320 427 - -
Cec09g1638 679 MobiDBLite consensus disorder prediction 647 669 - -
Cec09g1638 679 Pfam Leucine rich repeat 156 216 IPR001611 GO:0005515(InterPro)
Cec09g1638 679 Pfam Leucine Rich Repeat 229 245 IPR001611 GO:0005515(InterPro)
Cec09g1638 679 MobiDBLite consensus disorder prediction 645 679 - -
Cec09g1638 679 SMART serkin_6 351 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec09g1638 679 FunFam Somatic embryogenesis receptor-like kinase 1 428 645 - -
Cec09g1638 679 Pfam Protein tyrosine and serine/threonine kinase 353 625 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec09g1638 679 Gene3D Phosphorylase Kinase; domain 1 320 427 - -
Cec09g1638 679 MobiDBLite consensus disorder prediction 1 24 - -
Cec09g1638 679 SUPERFAMILY L domain-like 91 263 - -
Cec09g1638 679 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524(InterPro)
Cec09g1638 679 MobiDBLite consensus disorder prediction 263 282 - -
Cec09g1638 679 Pfam Leucine rich repeat N-terminal domain 90 129 IPR013210 -
Cec09g1638 679 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 73 650 - -
Cec09g1638 679 Gene3D Transferase(Phosphotransferase) domain 1 428 645 - -
Cec09g1638 679 ProSiteProfiles Protein kinase domain profile. 351 638 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec09g1638 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec09g1638 679 Gene3D Ribonuclease Inhibitor 89 268 IPR032675 -
Cec09g1638 679 FunFam Somatic embryogenesis receptor kinase 1 88 273 - -
Cec09g1638 679 SUPERFAMILY Protein kinase-like (PK-like) 333 626 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2097 Cec-Chr5:32771248 Cec09g1638 Cec-Chr9:29586358 2.20E-35 dispersed
Cec09g1638 Cec-Chr9:29586358 Cec10g0926 Cec-Chr10:20516035 1.30E-209 dispersed
Cec11g0838 Cec-Chr11:10406926 Cec09g1638 Cec-Chr9:29586358 1.80E-11 dispersed
Cec09g1638 Cec-Chr9:29586358 Cec11g0528 Cec-Chr11:5619330 1.20E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72269 PF00069 Pkinase 4.10E-45 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1638 K13416 - csv:101216386 995.727