Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec09g1700 | ATGAAGTTATGGGTTCCTCACTGTTTCCTTCTCAATGGGGATGGGGGTTTGATTATTGTGGCAGATGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACCTCAAAGATGTTCGTTGTGACCTTGATCCAATGCTTATTGCTAATCATGTGAGAAGAACCAATGAACTAAAGGCTGACGTTGACATCCCTGATGATATAATTATGAAATTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGAAGAAATGCTATTTTGAGAGGCATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATATTTCTGGTACTAAAGTTCGAGGAGAATCTCATCTACTGTTGGTTGGTGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAATTGAGCAACCGAGCTGTGATTACGACTGGATTAGGAAGCACTAGCGCAGGACTGACTGTTGCTGCTGTTAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGCATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACAATCCATGAAGCAATGGAACAACAGACTATAAGTGTCGCAAAGGCTGGTCTTGTCACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTACGACCCTGAACAACCGCTCTCTGTCAATACAACGCTCTCCGGTCCCTTATTGAGTAGATTTGATATCGTTCTTGTGCTTTTAGATACAAAAAACCCTGCATGGGATGCAGTTGTTTCATCTCATATTCTCTCTGAGTGCGAACAAGAAAAGGGAAAGCATGACAATGACCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACATCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACTAAGGAAGCTGAGCAAATTATTTCAAACTATTATCAGCTTCAAAGAAGATCAGCCATGGATAATGCAGCCAGGACAACAGTACGTATGCTTGAAAGCTTGATACGGTTAGCACAAGCACATGCACGCCTTATGTTTAGAAATGAGGTTACCCGGCTCGATGCCATTACGGCTATTTTGTGCATTGAATCGTCCATGACGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAATTTTACCGACAACCCAGATGAGGAATATGCAAAGCAAGAAATTTTAATACTTGAGAAACTCAAATCGATGGACGAATAG | 1314 | 42.54 | MKLWVPHCFLLNGDGGLIIVADDVIVTGVLSAKWSPDLKDVRCDLDPMLIANHVRRTNELKADVDIPDDIIMKFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDISGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPAWDAVVSSHILSECEQEKGKHDNDLSSNWPLTMLRRYIQFVKGYFRPVLTKEAEQIISNYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSALVDSVGNALHSNFTDNPDEEYAKQEILILEKLKSMDE | 437 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 31578651 | 31590636 | + | CePI673135_09g017000.1 | Cec09g1700 | 212210 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec09g1700 | 437 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 187 | 201 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec09g1700 | 437 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 215 | 228 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec09g1700 | 437 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 238 | 250 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec09g1700 | 437 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 129 | 144 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec09g1700 | 437 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 265 | 273 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec09g1700 | 437 | CDD | MCM9 | 91 | 395 | - | - | |
| Cec09g1700 | 437 | Pfam | MCM P-loop domain | 90 | 293 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec09g1700 | 437 | FunFam | Probable DNA helicase MCM9 | 66 | 400 | - | - | |
| Cec09g1700 | 437 | ProSiteProfiles | MCM family domain profile. | 88 | 291 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cec09g1700 | 437 | Pfam | MCM AAA-lid domain | 314 | 395 | IPR041562 | - | |
| Cec09g1700 | 437 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 98 | 399 | IPR027417 | - | |
| Cec09g1700 | 437 | SMART | AAA_5 | 130 | 279 | IPR003593 | GO:0016887(InterPro) | |
| Cec09g1700 | 437 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 21 | 425 | IPR031327 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Cec09g1700 | 437 | Gene3D | - | 70 | 401 | IPR027417 | - | |
| Cec09g1700 | 437 | SMART | mcm | 1 | 397 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec09g1700 | Cec-Chr9:31578651 | Cec10g1313 | Cec-Chr10:27372882 | 1.70E-56 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec09g1700 | K10738 | - | csv:101205171 | 787.719 |