Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1744 ATGCCGGACTCCAATTTCCAAGACACGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAGCATTCAGAACAGAGTTGGCGATGAAGATGACGACATTAACGGCGGGGAAGAGTCCATAGATAATCCTCAGATGCGCTTCGAAGACTCTGGGGGAATGAGCGGCTCGGTCTCGGTAATGAACCGAGTCCAGGACGTTGTTCCTTCGACGTATGTTTCCAGCTCTGATTACAACCCTTTGACTGGAAACGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCACCGGACAAGGTGCAAGCGGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAGTTGGAAGTGTTCCCATCAACCAGCAGGGTACCGATGGCTTTCCTGTCAGGTTAGTTCAACCACAAAGAGCTGCTTCATTGAGTAGATTTAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGTTACAGTGTGCGAAAAGAAGTTGCGCTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCCATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACCCATTGTGGAACCAGTTCGAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGGCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATCTTGAGGGATCTTTCCAAGGTTTCAAACACTGGCATCCAAGAACCCTCTGTGAAAGAGACTCAACAGAGCGACGGCGAAGCTGCTAATGAATCTGATCCTGCAATTAATGTGGATATTCTCACTTCTAATGGTGATAAATAG 924 48.05 MPDSNFQDTMYGSGVMNNGGRDLDSIQNRVGDEDDDINGGEESIDNPQMRFEDSGGMSGSVSVMNRVQDVVPSTYVSSSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPINQQGTDGFPVRLVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNTGIQEPSVKETQQSDGEAANESDPAINVDILTSNGDK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32728035 32733832 + CePI673135_09g017440.1 Cec09g1744 212254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1744 307 MobiDBLite consensus disorder prediction 267 307 - -
Cec09g1744 307 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g1744 307 MobiDBLite consensus disorder prediction 1 58 - -
Cec09g1744 307 MobiDBLite consensus disorder prediction 1 24 - -
Cec09g1744 307 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g1744 307 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cec09g1744 307 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Cec09g1744 307 CDD ZnF_GATA 224 274 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g1744 307 SMART tify_2 86 121 IPR010399 -
Cec09g1744 307 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Cec09g1744 307 Gene3D - 221 286 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cec09g1744 307 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g1744 307 PANTHER GATA TRANSCRIPTION FACTOR 28 38 292 IPR045280 GO:0006355(InterPro)
Cec09g1744 307 Pfam tify domain 90 120 IPR010399 -
Cec09g1744 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cec09g1744 307 SMART GATA_3 219 272 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1744 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1191 Cec-Chr8:23828833 Cec09g1744 Cec-Chr9:32728035 1.40E-58 dispersed
Cec09g0164 Cec-Chr9:1428925 Cec09g1744 Cec-Chr9:32728035 2.10E-56 dispersed
Cec09g1744 Cec-Chr9:32728035 Cec01g1751 Cec-Chr1:32095505 4.20E-06 dispersed
Cec09g1744 Cec-Chr9:32728035 Cec05g0755 Cec-Chr5:6241107 5.50E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g0164 . 1 229 Tify Gene Family AT3G21175 56.8 5.2e-59 224.6
Cec08g1191 . 238 431 Tify Gene Family AT4G24470 61.8 1.2e-59 227.3
Cec09g1744 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Cec09g0164 . 1 287 Tify Gene Family AT1G51600 59.7 7.4e-88 320.9
Cec09g1744 . 86 269 Tify Gene Family AT1G51600 60.9 5.0e-52 201.8
Cec08g1191 . 232 431 Tify Gene Family AT1G51600 52.5 5.0e-44 175.3
Cec08g1191 . 238 431 Tify Gene Family AT4G24470 61.8 1.2e-59 227.3
Cec09g1744 . 89 267 Tify Gene Family AT4G24470 59.7 3.5e-48 189.1
Cec09g0164 . 1 287 Tify Gene Family AT1G51600 59.7 7.4e-88 320.9
Cec09g1744 . 86 269 Tify Gene Family AT1G51600 60.9 5.0e-52 201.8
Cec08g1191 . 232 431 Tify Gene Family AT1G51600 52.5 5.0e-44 175.3
Cec09g0164 . 1 229 Tify Gene Family AT3G21175 56.8 5.2e-59 224.6
Cec06g0653 . 1 180 Tify Gene Family AT4G14713 53.1 1.0e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30258 PF06203 CCT 1.60E-15 CL0281 Cec TF