Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1771 ATGGCTGCCGCCATTGGACCTCTAACCTCTACGAAAACATCAGGAGCTGCATTTTTGGTTTTCTTGTTTCTGTCAATGGCGGCTGTGGGGGGTTTGATGACCGGCTCTACCCGTCCGAGTGTTGAATTTATTGCTCCTTCAACGTCGTATTCTGCTCCGGTGCGTGTGTTCTTCAAGCCCCTTAAGGGTAAGAGACTTATGCTGAAGAGGGGAGGTTCTTGGGGTCCTAGGTGCGAGGTCGATCCCAATTCCACCTCGGTTCGAAGCGATCTGATTGGTTCGAATGCACCTGGTCTTTCGGCTCTTGAATTGCTTAAGACTTCTTCAGTTAATAGATATACAAGAGAAAGGAGCAGTATTGTGGTGATTGGTCTTAATGTTCACACTGCACCAGTAGAGTTGCGTGAGAAACTTGCCATTCCAGAAGCTCAATGGCCTCAGGCCATTGGTGAACTCTGTGCTCTGAACCATATAGAAGAAGCTGCTGTTCTTAGTACTTGTAATCGGATCGAGATTTATGTTGTAGCATTGTCGCAGCATCGTGGGGTTAAAGAAGTGACAGAATGGATGTCCAAGAGAAGTGGAATTCCTATGTCAGAGCTTTGTAAGCATAGGGTTCTATTATACAATAACGATGCGACTCAGCACCTCTTTGAAGTTTCTGCGGGTCTCGACTCTCTTGTGCTTGGAGAAGGTCAAATTCTTGCTCAGGTGAAACATGTTGTTAAAACAGGACAAGGTGTAGCTGGTTTTGACAGAAAAATTAGTGGGTTGTTCAAGCATGCAATCACTGTCGGAAAGCAGGTTAGAACCGAGACCAACATTTCCTCAGGGTCGGTTTCTGTCAGTTCGGCTGCTGTGGAGCTCGCACAGAAGAAACTTCCAGAATCTTCATATGCTACTGCAAAAGTGATGGTAGTTGGTGCAGGAAAAATGGGAAAACTTGTGATCAAACACTTGGTCGCAAAAGGATGTAGGAAGATGATGGTTGTGAACAGAACTCAGGACAGTGTCGATGCTCTAAGCAAGGAACTCAAAGATGTTGAGATAATCTACAAACCCCTCCCAGACATTTTAGCGTGTGCTGCTGAAGCGGATGTCATCTTCACCTGCACTGCTTCGAAAACACCCTTATTCATGAAAGAACATGTAGGTATGCTCCCCTCTCCACGGACTGTAACAGGAAGACGTTTATTTGTCGATATATCAGTTCCAAGGAATGTCGAGCCATGTATATCAGATCTTGAGACCGTGTCTGTCTTCAATGTGGACGATCTCAAGGAAGTTGTGGCTGCTAACAAGGAGGATAGACTACAGAAAGTTCAGGAGGCTCAGTCGATAATCGCAGAAGAAATAAACAAATTTCAAGCATGGAAGGATTCCCTTGAAACTGTTCCTACCATCAAGAAGTTTAGAGCTTATGTTGAGAGGATTAGGGCTGCTGAACTAGACAAATGTTTGTCTAAGATGGGTGAAGACATCCCAAAGAAAAAGAAAGTAGCCATTAATGATCTTAGCTTGGGTATAGCTAACAAGCTACTTCATGGTCCAATACAGCACTTGAGATGTGATGGCAATGATAGCCGGACGTTGGATGAGATACTTCAGAATATGCATGCTATTAACAGAATGTTTGATCTTGAGACAGATTTGTCCGTCTTGGAAGATAAGATTAGAGCAAAAGTTGAACGTGGCCAGAAGTAG 1704 44.37 MAAAIGPLTSTKTSGAAFLVFLFLSMAAVGGLMTGSTRPSVEFIAPSTSYSAPVRVFFKPLKGKRLMLKRGGSWGPRCEVDPNSTSVRSDLIGSNAPGLSALELLKTSSVNRYTRERSSIVVIGLNVHTAPVELREKLAIPEAQWPQAIGELCALNHIEEAAVLSTCNRIEIYVVALSQHRGVKEVTEWMSKRSGIPMSELCKHRVLLYNNDATQHLFEVSAGLDSLVLGEGQILAQVKHVVKTGQGVAGFDRKISGLFKHAITVGKQVRTETNISSGSVSVSSAAVELAQKKLPESSYATAKVMVVGAGKMGKLVIKHLVAKGCRKMMVVNRTQDSVDALSKELKDVEIIYKPLPDILACAAEADVIFTCTASKTPLFMKEHVGMLPSPRTVTGRRLFVDISVPRNVEPCISDLETVSVFNVDDLKEVVAANKEDRLQKVQEAQSIIAEEINKFQAWKDSLETVPTIKKFRAYVERIRAAELDKCLSKMGEDIPKKKKVAINDLSLGIANKLLHGPIQHLRCDGNDSRTLDEILQNMHAINRMFDLETDLSVLEDKIRAKVERGQK 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33364990 33367388 + CePI673135_09g017710.1 Cec09g1771 212281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1771 567 FunFam Glutamyl-tRNA reductase 119 278 - -
Cec09g1771 567 Pfam Shikimate / quinate 5-dehydrogenase 288 429 IPR006151 -
Cec09g1771 567 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 278 437 IPR036291 -
Cec09g1771 567 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 443 547 IPR015896 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cec09g1771 567 ProSitePatterns Glutamyl-tRNA reductase signature. 216 239 IPR018214 GO:0008883(InterPro)
Cec09g1771 567 Hamap Glutamyl-tRNA reductase [hemA]. 119 545 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cec09g1771 567 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 119 275 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cec09g1771 567 FunFam Glutamyl-tRNA reductase 278 436 - -
Cec09g1771 567 CDD NAD_bind_Glutamyl_tRNA_reduct 120 441 - -
Cec09g1771 567 Gene3D - 118 278 IPR036343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cec09g1771 567 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 441 529 IPR036453 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cec09g1771 567 Gene3D - 279 430 - -
Cec09g1771 567 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 66 563 - -
Cec09g1771 567 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 123 273 IPR015895 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
Cec09g1771 567 NCBIfam glutamyl-tRNA reductase 120 528 IPR000343 GO:0008883(InterPro)|GO:0033014(InterPro)|GO:0050661(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1771 K02492 - - csv:101208135 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1228 Cec-Chr8:24224100 Cec09g1771 Cec-Chr9:33364990 2.30E-204 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g877 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00657 Csa07g00638 . Cme01g00165 . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01608 Cam09g1542 Cec09g1771 Cco09g1855 . . Cre01g0789 . . Chy01g00173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014173 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 23