Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1863 ATGGCCCAGCCTTCCAACGGTGCTGATCTCAATCCCCAGGCCCCTCACCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCATCAACAGCAGATGATGATGTATCCTCCTCAGCATTACATGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCAACAACAGCAGCCATCGCAGCAGCAGCAGCAGCAAGCTCAGTCGCAGCGACCTCGCAGACAAGGGTCAACGGACGAGGTTAAAACGCTTTGGATTGGTGACCTTCAGCCTTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCGCATGCAACGGCCGATAAAGTTTTGCAGAATTATAATGGTGCTATAATGCCTAACACAGAGCTGCCTTTCCGTCTCAATTGGGCAACTTTTAGTGCAAATGATAGGCGACCAGACACTGGTTCTGACCTATCGATATTTGTTGGTGATTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAGATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAAGGTTATGGCTTTGTCAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAGGCATCTGGATATCAACAAGGTTATTCTTCACAAGCTTTGGTACTGGCTGGTGGACATGCAAATGGCATGGCCATCCAGGGTTCACAATCAGATGGCGAGTCAAACAACACGACTATATTTGTTGGCGGCCTTGATTCTGATGTTAGTGATGAAGATCTCAAGCAACCTTTCTCTAAATTTGGTGATGTTGTATCTGTGAAAATTCCTATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACGGGGAACAAGCAGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGACGTTATGGCGGGCAAGGCTACGGTGGATATGGTGGTGGCTACTACTCCGTACCACAGCATCAGGACACAAACATGCATGCCACAGCTGCTGCAGTTAATGGATCATCTTGA 1308 46.18 MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMAYSHHPYQQQQQQQQQPSQQQQQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAIQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQGYGGYGGGYYSVPQHQDTNMHATAAAVNGSS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35255250 35265281 + CePI673135_09g018630.1 Cec09g1863 212373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1863 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723(InterPro)
Cec09g1863 435 CDD RRM2_SECp43_like 191 270 - -
Cec09g1863 435 Pfam RNA recognition motif 312 375 IPR000504 GO:0003723(InterPro)
Cec09g1863 435 Pfam RNA recognition motif 101 170 IPR000504 GO:0003723(InterPro)
Cec09g1863 435 Pfam RNA recognition motif 194 264 IPR000504 GO:0003723(InterPro)
Cec09g1863 435 FunFam Polyadenylate-binding protein RBP47B 180 282 - -
Cec09g1863 435 Gene3D - 57 190 IPR012677 -
Cec09g1863 435 MobiDBLite consensus disorder prediction 64 91 - -
Cec09g1863 435 SUPERFAMILY RNA-binding domain, RBD 302 412 IPR035979 GO:0003676(InterPro)
Cec09g1863 435 FunFam Polyadenylate-binding protein RBP47B 98 178 - -
Cec09g1863 435 FunFam Polyadenylate-binding protein RBP47 292 413 - -
Cec09g1863 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 382 IPR000504 GO:0003723(InterPro)
Cec09g1863 435 SUPERFAMILY RNA-binding domain, RBD 63 183 IPR035979 GO:0003676(InterPro)
Cec09g1863 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723(InterPro)
Cec09g1863 435 MobiDBLite consensus disorder prediction 64 97 - -
Cec09g1863 435 Gene3D - 293 418 IPR012677 -
Cec09g1863 435 CDD RRM1_SECp43_like 100 180 - -
Cec09g1863 435 Gene3D - 191 268 IPR012677 -
Cec09g1863 435 MobiDBLite consensus disorder prediction 1 25 - -
Cec09g1863 435 SUPERFAMILY RNA-binding domain, RBD 175 284 IPR035979 GO:0003676(InterPro)
Cec09g1863 435 SMART rrm1_1 311 378 IPR000504 GO:0003723(InterPro)
Cec09g1863 435 SMART rrm1_1 100 173 IPR000504 GO:0003723(InterPro)
Cec09g1863 435 SMART rrm1_1 193 267 IPR000504 GO:0003723(InterPro)
Cec09g1863 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 383 IPR050825 GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005829(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1863 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0462 Cec-Chr3:4951878 Cec09g1863 Cec-Chr9:35255250 2.60E-103 dispersed
Cec05g2183 Cec-Chr5:33412068 Cec09g1863 Cec-Chr9:35255250 2.60E-123 dispersed
Cec05g2185 Cec-Chr5:33443120 Cec09g1863 Cec-Chr9:35255250 9.70E-123 dispersed
Cec08g1613 Cec-Chr8:27566159 Cec09g1863 Cec-Chr9:35255250 5.40E-25 dispersed
Cec09g1863 Cec-Chr9:35255250 Cec11g0146 Cec-Chr11:1720736 3.30E-28 dispersed
Cec07g1598 Cec-Chr7:31510656 Cec09g1863 Cec-Chr9:35255250 7.50E-08 transposed
Cec02g0641 Cec-Chr2:6498534 Cec09g1863 Cec-Chr9:35255250 1.30E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117