Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1880 ATGAATTATTTGAATCTACTCCTCTTCTTCCTCTTCCTTACATCTACACTAACCAAAACGCGGTCAGATCCGCCGTCTAGCCCCGGTGGCAGCGGCGGCGGCGGCAAGCACTTCGTTCTAGTTCACGGAGCTTGCCTTGGCGCCTGGTCGTGGTACAAACTATCCACGCTGCTCCAATCGGCCGGGCACCGCGTGACAGCGATAGACATGGCGGCGGCCGGAGTAGATCAGAGGGAGGCGGAGAATCTGAAATCGTTTAGCGAATACGTTCAGCCGTTGATGAATTTCATGGCGGAGCTGAGGGCGGAGGAGAAGGTGATTCTGGTAGGGCACAGCCAAGGCGGGCTGTGCATCTCGAAGGCGATGGAGGGCTTTCCGGAGAAAATATCTGTAGCTGTTTTTGTCGTCGCCGCCATGCCTGGCCCATCGCTAAACGTTTCCTTTCTACTTGGACAGTTTCGCAAGAGGATAGATTTTGGGCCAGACAGCCGTTATACGTTTGGTAATGGGCCTAAGAGCCCTCCAGCAACTTTGACATTTGGCCCATTGTTCTTAGCATCAAAACTATTCAACAAGATCCCCAAAGAGGATTTGACATTGGGGAAGACATTGATGAGACCAACCCATTTGTTTGAGGCACAACAATGGAACAAGGATCTAGTTTTGACTAAGGAAAGGTATGGCGCCGTCAAACGAGTTTTTGTTGTTTCGGATAAGGATAAGGTTATCCAAATGAGCTTCCAAAAATGGGTGATTCAAAAAGATCCACCTACTGCTGTTGTGGAAGTTAGGGGATCAGATCATATGGTGATGATGTCTAAGCCGTTGGATCTCTTCAATAAACTTTCCCACATTGCTCATCACTATTCTTAG 873 49.14 MNYLNLLLFFLFLTSTLTKTRSDPPSSPGGSGGGGKHFVLVHGACLGAWSWYKLSTLLQSAGHRVTAIDMAAAGVDQREAENLKSFSEYVQPLMNFMAELRAEEKVILVGHSQGGLCISKAMEGFPEKISVAVFVVAAMPGPSLNVSFLLGQFRKRIDFGPDSRYTFGNGPKSPPATLTFGPLFLASKLFNKIPKEDLTLGKTLMRPTHLFEAQQWNKDLVLTKERYGAVKRVFVVSDKDKVIQMSFQKWVIQKDPPTAVVEVRGSDHMVMMSKPLDLFNKLSHIAHHYS 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35585292 35588352 - CePI673135_09g018800.1 Cec09g1880 212390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1880 290 PANTHER METHYLESTERASE FAMILY MEMBER 36 289 IPR045889 GO:0009694(PANTHER)|GO:0009696(PANTHER)|GO:0080030(PANTHER)|GO:0080031(PANTHER)|GO:0080032(PANTHER)
Cec09g1880 290 Gene3D alpha/beta hydrolase 35 290 IPR029058 -
Cec09g1880 290 Pfam alpha/beta hydrolase fold 37 275 IPR000073 -
Cec09g1880 290 FunFam (S)-hydroxynitrile lyase 34 290 - -
Cec09g1880 290 SUPERFAMILY alpha/beta-Hydrolases 32 280 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1880 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0604 Cec-Chr2:5931741 Cec09g1880 Cec-Chr9:35585292 4.00E-75 dispersed
Cec04g1344 Cec-Chr4:33071886 Cec09g1880 Cec-Chr9:35585292 6.50E-56 dispersed
Cec04g1345 Cec-Chr4:33077848 Cec09g1880 Cec-Chr9:35585292 7.70E-57 dispersed
Cec04g1346 Cec-Chr4:33082268 Cec09g1880 Cec-Chr9:35585292 1.80E-53 dispersed
Cec03g0770 Cec-Chr3:8606282 Cec09g1880 Cec-Chr9:35585292 6.90E-67 transposed
Cec02g0601 Cec-Chr2:5910829 Cec09g1880 Cec-Chr9:35585292 4.30E-64 wgd
Cec04g1343 Cec-Chr4:33067895 Cec09g1880 Cec-Chr9:35585292 1.70E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g475 . . . . . . . . . . . . . . Sed08g2645 . . Bhi05g01157 Tan02g0874 Cmetu01g0432 . . . . . . . . . . . . Cone8ag1158 . . . Csa07g00789 . . . . . . . . . . . . . Cma11g01774 . . . . . . . . . . . . Cla09g01724 Cam09g1820 Cec09g1880 Cco09g1973 . . . . Csa02g01207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112