Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1884 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTCATTTTCACAAGCTTGTTCTCACCTCAACTATCCAAGCTAGGAAATTGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGTTTGAGAAAAGCCGATAACAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCCATACGGGTTGGGTATTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATGCTTCTGAAATAAACTACCAATCAGCTGCTCTCAGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCCTCCAATCAGTCCATGAATTCCGGTTCTTTGCGAAATAAGCTATTTGGGGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAGTATTTATCTACTCGAGATATTGGGGTTCAGTTTAGCGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCTCACAGAATTAAAAAGAGTGGAGGGAAAAAGCGGAAAATTGAGTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGATATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAAGCTTTTGAGCCCGGTAATCCTTTCTGCAGAGTTGTCTTGCGACCATCCTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGACGGGAGACAGTGGCCAGTCCGATGTCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTCTGCCTGGAAAATAATCTAGGGGAGGGTGACGTTTGTGTGTTTGAGCTTCTTAGAATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAACCCCCAATCCTGCTAGCATGATGCATCCACCTCCGCTGCGAAGCGTTAGCCACATTAAACTGATCAGAAATTAA 1239 41.97 MTDFSAFRTGGFKRKMPRPHFHKLVLTSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSAFCVFIFNLNASEINYQSAALSSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRIKKSGGKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMATPNPASMMHPPPLRSVSHIKLIRN 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35626499 35629485 + CePI673135_09g018840.1 Cec09g1884 212394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1884 412 SUPERFAMILY DNA-binding pseudobarrel domain 281 380 IPR015300 -
Cec09g1884 412 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Cec09g1884 412 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Cec09g1884 412 Gene3D - 263 383 IPR015300 -
Cec09g1884 412 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677(InterPro)
Cec09g1884 412 CDD B3_DNA 284 379 IPR003340 GO:0003677(InterPro)
Cec09g1884 412 Pfam B3 DNA binding domain 21 111 IPR003340 GO:0003677(InterPro)
Cec09g1884 412 Pfam B3 DNA binding domain 288 379 IPR003340 GO:0003677(InterPro)
Cec09g1884 412 PANTHER B3 DOMAIN-CONTAINING 17 366 IPR050655 -
Cec09g1884 412 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Cec09g1884 412 SMART B3_2 286 381 IPR003340 GO:0003677(InterPro)
Cec09g1884 412 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Cec09g1884 412 Gene3D - 13 114 IPR015300 -
Cec09g1884 412 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1370 Cec-Chr2:30780552 Cec09g1884 Cec-Chr9:35626499 3.00E-32 dispersed
Cec02g1380 Cec-Chr2:30856474 Cec09g1884 Cec-Chr9:35626499 5.10E-11 dispersed
Cec02g1381 Cec-Chr2:30865750 Cec09g1884 Cec-Chr9:35626499 5.90E-20 dispersed
Cec09g1884 Cec-Chr9:35626499 Cec09g1885 Cec-Chr9:35644869 3.00E-47 tandem
Cec07g1834 Cec-Chr7:34029869 Cec09g1884 Cec-Chr9:35626499 2.90E-30 transposed
Cec04g1337 Cec-Chr4:33009232 Cec09g1884 Cec-Chr9:35626499 1.80E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30263 PF02362 B3 5.70E-18 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1884 - - - 0.0