Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1893 ATGCCGACCGCCCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCCTCCTCCTCCACCGCCGTCAATTTCCCTCCCCCCGCCTCCTTGCAGTCGGCAAAGCTCCCCGTCGATTTCAGTCCCCCTCTAATCGCCATGGTTGTCGTCATCGCTACCGCCTTCCTCATCGTCACTTACTCTCGCCTCATCTCCCGCCATCTCATCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGTCGTCGCTGGCGCCGGTGGCGGCGCCGACGTCGACGCGCCCGATCTTACCTTCCGTCTTCCTCTGGAGGCGACCTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACAGATGGCTTCCACGTTTTCTCTCCGTACGGTCTCGACGAATCCGTAATCAAGACGATTCCGCTTTCCGTTTACACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTCGAGTTTGAAGACGATGATTACGTCAGAACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACACGCGAACTGTCCTCTTTGTCGCGCGGTGGTTTTCAGGCCTGAATCTCCATTTACACCGGTTATGGCGGCTAGAATCCGGCCAAGCCTCGATGATACGATCTTACGGAGTATCGTATTAGAGCCGCTCGTGGAAGGTCCTATTCCTAATCTAGATTCTTATCACGCGACGGAATCGGAAATTACTCCTTGCGTTGATGAACCACGGAATAGCAATTCCGTGGAGGATCAAATGAACGGACAAGATTTCTTGCTGAAGCGATCGTATTCATTTGGATTCGAACGGAGCGTAGCGTCGGAGAGAATGATTCTGGAACCAGCGACCACGTCTCCTTGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGTCCGTCGCCGTTCGGATCTCTACCGAAGGCAAGAGTGTTTTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGAAGAGGAGGATTCTTTCCGCTATCGGAATCAAGCTGGAGATTTTCCAGCGGTGTAGGCGGAGGCTCATCGAGACGGAGTAAGTCAATGACGAGTCCGATGTTTCTCCGATCGTCGGTAACCGGCGGAGGAACAACGGCGTTCTCGTCAAGCCGGTTGAGATGCGGAGATCCCGAGGCGTTATTATCACCGGAGAGATTCAACCAAAGATGA 1215 53.66 MPTAPSPSPSPSPSPSSSSTAVNFPPPASLQSAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHRRRWRRWRRRRRRARSYLPSSSGGDLDSLPYDSPFFEPTDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLVEGPIPNLDSYHATESEITPCVDEPRNSNSVEDQMNGQDFLLKRSYSFGFERSVASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSSGVGGGSSRRSKSMTSPMFLRSSVTGGGTTAFSSSRLRCGDPEALLSPERFNQR 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35784363 35785577 - CePI673135_09g018930.1 Cec09g1893 212403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1893 404 SUPERFAMILY RING/U-box 146 198 - -
Cec09g1893 404 CDD RING-H2_EL5-like 149 192 - -
Cec09g1893 404 Pfam Ring finger domain 149 192 IPR001841 -
Cec09g1893 404 MobiDBLite consensus disorder prediction 350 386 - -
Cec09g1893 404 MobiDBLite consensus disorder prediction 1 23 - -
Cec09g1893 404 FunFam RING-H2 finger protein ATL65 121 196 - -
Cec09g1893 404 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Cec09g1893 404 PANTHER RING-H2 FINGER PROTEIN ATL16 18 215 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cec09g1893 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 196 IPR013083 -
Cec09g1893 404 SMART ring_2 150 191 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1893 Cec-Chr9:35784363 Cec09g1997 Cec-Chr9:36987328 1.40E-17 dispersed
Cec09g1893 Cec-Chr9:35784363 Cec05g0504 Cec-Chr5:4040573 1.80E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1893 - - - 0.0