Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1895 ATGGGGAAAGGAGGCGGATGCGTACCTAGCAAGAACAGAGCATCGGTAGCCGTCTCCGATCCACATCCAACTCCCGATCAACCAAAATCCACTGCCGGAGAAATCTCCAGAAATCTCAGGATCTTCATCGTCTATTACTCCATGTACGGTCACGTCCATCTCTTGGCGAAGATGATGAAGAAAGGAGTCGATTCTGTAGACGGCGTCGAAGGTGTTCTGTTTAAGGTGCCGGAGACGCTGCCGTTGGAGACGCTGGAGCAGATGAGAGTTCCGCCGAAGGACGACGGCGTGCCGGTGATTTCCGTGGAGGAGATGGTGGAGGCGGACGGATTCTTGTTTGGATTTCCGACGAGGTATGGATCCATGGCGGCACAGATGAAGTCATTTTTTGATTCGACGATTGATCTTTGGGAGGATCAGAGGCTGGCCGGAATTCCTGCCGGATTCTTTGTTGGTACTGGAACCCAAGGCGGCGGCCAAGAGACGACGGCCTTAACAGCAGTGACTCTTCTAGCACATCATGGGATGGTGTATGTTCCAATAGGGTACACTTTTGGGAGTGAAATGACCAATTTGGAGTCCTTAAGAGGAGGATCCCCATATGGAGCTGGAGTTTTCTCTGGTGATGGCTCAAGACCTCCATCTTCTATTGAGCTTGATCTTGCTCATTATCAAGGCAAGTACATGGCTACCATACTTAAAAAATCCCTCCCTCACCCTTAA 723 50.76 MGKGGGCVPSKNRASVAVSDPHPTPDQPKSTAGEISRNLRIFIVYYSMYGHVHLLAKMMKKGVDSVDGVEGVLFKVPETLPLETLEQMRVPPKDDGVPVISVEEMVEADGFLFGFPTRYGSMAAQMKSFFDSTIDLWEDQRLAGIPAGFFVGTGTQGGGQETTALTAVTLLAHHGMVYVPIGYTFGSEMTNLESLRGGSPYGAGVFSGDGSRPPSSIELDLAHYQGKYMATILKKSLPHP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35803931 35805550 - CePI673135_09g018950.1 Cec09g1895 212405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1895 240 SUPERFAMILY Flavoproteins 40 235 IPR029039 -
Cec09g1895 240 Gene3D - 38 236 IPR029039 -
Cec09g1895 240 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 39 235 - GO:0003955(PANTHER)|GO:0016020(PANTHER)
Cec09g1895 240 MobiDBLite consensus disorder prediction 1 32 - -
Cec09g1895 240 Pfam NADPH-dependent FMN reductase 54 183 IPR005025 GO:0016491(InterPro)
Cec09g1895 240 NCBIfam NAD(P)H:quinone oxidoreductase, type IV 40 235 IPR010089 GO:0003955(InterPro)|GO:0010181(InterPro)
Cec09g1895 240 ProSiteProfiles Flavodoxin-like domain profile. 41 229 IPR008254 GO:0010181(InterPro)
Cec09g1895 240 FunFam NAD(P)H dehydrogenase (Quinone) FQR1-like 38 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1895 K03809 - - csv:101211762 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1628 Cec-Chr4:35597608 Cec09g1895 Cec-Chr9:35803931 2.90E-80 dispersed
Cec04g1947 Cec-Chr4:37782846 Cec09g1895 Cec-Chr9:35803931 2.50E-63 dispersed
Cec09g1895 Cec-Chr9:35803931 Cec10g0575 Cec-Chr10:7171961 1.80E-44 dispersed
Cec09g1895 Cec-Chr9:35803931 Cec10g0565 Cec-Chr10:6932453 1.10E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g556 . Blo15g00688 Bda06g00948 . Bpe07g00459 . . Bma12g00546 . . Cma02g00425 . Car02g00281 . . . . . . . . . . . . . . . . . . . . Cone3ag1142 . Lsi10g00335 . Chy11g00416 . . . . . . . . . . Cmo02g00426 . . . . . . Cpe05g01236 . . . . . . . Cla09g01743 Cam09g1834 Cec09g1895 Cco09g1987 . . Cre01g0676 . Csa02g01222 . Cme11g00475
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29