Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1901 ATGGATGACTGTATCAGCAGCGATGAGGACTACTATGACTCCGATCGAGACTCTCTCCATGGTCTTGAGAACGAGGACTCTGAAATTCAGTGGGTTCCTAAAGGTCCCGCGACTAAGGTTATTACGAAGGAATCTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTGATGGACTTGCTTTCGTTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAAAAGTCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAACAGTTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCACAAATGTAATGCGATTTGTGATGAAGCTGTTGTTAGGAATCTAGTTAGCAAAAGGCATCCAGATCTTGCTAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGATAACAAAAGAGTCAAGTGGTGTCCAAGTACTCCTCATTGTGGCAATGCTATTCGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCAGAAGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAATGCCGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCTGTCGAGAAGAATGGAGGTTGTAACCTTGTCAGCTGCATCTGCGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACGGGTCGAGAGCATACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAGCGAGCAAAACGGGATTTATATCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTGGAAAGCAAATTGAAGGAATCTATACAAGAGAAGATCTCGATATCGGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGAGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAGGAGCCCTTTGATCAATATACTAAAGATAAGGTAATGGAGATACGGATGCAAGTTATCAATCTGTCGGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCAAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATCCTTCAGACAAATATCCACCATCAGACTGTGGTACAAGTGGAGGATTGTCGGAATGCGAACGACTGACTAGCTTGAATTCTGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTACTGGCAACTTTTTTGATCTTAACTTGCCTGCTGAGGTTGAATATATTGTCTTCGGCTGA 1776 42.74 MDDCISSDEDYYDSDRDSLHGLENEDSEIQWVPKGPATKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKSHLFATAGVTMIENRSNSSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANPSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVTGNFFDLNLPAEVEYIVFG 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35866373 35870982 + CePI673135_09g019010.1 Cec09g1901 212411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1901 591 CDD BRcat_RBR_ANKIB1 197 261 - -
Cec09g1901 591 SUPERFAMILY RING/U-box 114 202 - -
Cec09g1901 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cec09g1901 591 CDD RING-HC_RBR_TRIAD1 117 170 - -
Cec09g1901 591 CDD Rcat_RBR_ARI1-like 273 326 - -
Cec09g1901 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 360 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cec09g1901 591 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
Cec09g1901 591 SUPERFAMILY RING/U-box 260 325 - -
Cec09g1901 591 Pfam IBR domain 272 314 IPR054694 -
Cec09g1901 591 Pfam Ariadne domain 329 585 IPR045840 -
Cec09g1901 591 SUPERFAMILY RING/U-box 191 259 - -
Cec09g1901 591 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 83 IPR048962 -
Cec09g1901 591 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cec09g1901 591 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
Cec09g1901 591 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
Cec09g1901 591 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
Cec09g1901 591 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cec09g1901 591 Gene3D - 248 496 - -
Cec09g1901 591 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1901 K11968 - - csv:101205066 1154.04
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g1901 . 164 584 ARIADNE family AT4G34370 72.6 7.3e-182 633.6
Cec09g1901 . 58 542 ARIADNE family AT2G16090 77.4 6.1e-225 776.9
Cec09g1901 . 38 543 ARIADNE family AT3G27710 62.0 4.4e-184 641.3
Cec09g1901 . 44 522 ARIADNE family AT3G27720 54.5 5.3e-144 508.1
Cec08g0471 . 61 538 ARIADNE family AT1G05890 73.2 3.0e-218 755.0
Cec11g0935 . 62 244 ARIADNE family AT1G05890 72.1 4.2e-71 266.2
Cec08g0471 . 57 589 ARIADNE family AT1G65430 72.4 8.3e-242 833.2
Cec11g0935 . 62 296 ARIADNE family AT1G65430 73.2 7.1e-92 335.1
Cec08g0471 . 58 454 ARIADNE family AT2G31780 58.4 6.3e-144 507.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46