Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1926 ATGGCTTCAATGGAGTTCCTAATCCTCCAATTGGGTCTTCTTTTTATGGTCTCATCTGTTAATGCCAATTATGGAGGTTGGATCAACGCTCATGCCACTTTCTATGGTGGAAGCGATGCATCTGGGACAATGGGAGGGGCTTGTGGGTATGGTAATTTGTATAGCCAAGGCTATGGAACTAACACTGCGGCGCTGAGCACAGCGTTGTTTGATAATGGACTCAGCTGTGGCGCTTGCTTTGAGCTACGGTGTGTGAACGACCCCCAATGGTGTCTTCCAGGCACCATCGTTGTCACGGCCACTAATTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCATCATTTTGACCTCTCTCAGCCTATCTTCCAACACATTGCCCAATATCGCGCCGGAATTGTCCCCGTCGCTTATCGCAGAGTAAGGTGCAGGAGAAGTGGGGGAATAAGATTCACAATCAATGGGCATTCATATTTCAATTTGGTGTTGGTGACAAACGTGGGGGGCGCCGGAGATGTACATGCCGTGGCGATTAAGGGTTCGAAAACCAGATGGCAACCGATGTCTAGAAATTGGGGGCAAAATTGGCAATCCAACTCTTATCTGAACGGACAGAGTCTATCGTTTTTGGTCACCGCCAGCGACGGACGGCGAGTGCTCTCCTACAACGTGGCTCCCTCCGGCTGGTCCTTTGGACAGACTTATGTCGGCGGACAATTTCGTTATTAA 732 50.68 MASMEFLILQLGLLFMVSSVNANYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRRVLSYNVAPSGWSFGQTYVGGQFRY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36138553 36139440 + CePI673135_09g019260.1 Cec09g1926 212436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1926 243 Gene3D - 149 241 IPR036749 -
Cec09g1926 243 Gene3D - 15 145 IPR036908 -
Cec09g1926 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Cec09g1926 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Cec09g1926 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Cec09g1926 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Cec09g1926 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
Cec09g1926 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Cec09g1926 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Cec09g1926 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Cec09g1926 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Cec09g1926 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664(InterPro)
Cec09g1926 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Cec09g1926 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Cec09g1926 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Cec09g1926 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664(InterPro)
Cec09g1926 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664(InterPro)
Cec09g1926 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664(InterPro)
Cec09g1926 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664(InterPro)
Cec09g1926 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664(InterPro)
Cec09g1926 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Cec09g1926 243 SMART dpbb_1 62 139 IPR007112 -
Cec09g1926 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Cec09g1926 243 FunFam Expansin 149 241 - -
Cec09g1926 243 CDD DPBB_EXPA_N 26 144 - -
Cec09g1926 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Cec09g1926 243 FunFam Expansin 16 145 - -
Cec09g1926 243 PANTHER EXPANSIN-A15 14 241 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1926 Cec-Chr9:36138553 Cec11g0996 Cec-Chr11:16789062 4.80E-106 dispersed
Cec01g1758 Cec-Chr1:32142637 Cec09g1926 Cec-Chr9:36138553 1.40E-94 wgd
Cec05g2648 Cec-Chr5:37168435 Cec09g1926 Cec-Chr9:36138553 1.50E-110 wgd
Cec06g1810 Cec-Chr6:31564656 Cec09g1926 Cec-Chr9:36138553 1.30E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1926 K20628 - csv:101220358 474.552