Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1936 ATGGATTTAGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAACGGTGTTCTCAAGCGCCACCATCACCGTCAATCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGTTTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGAGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 903 51.16 MDLAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQSSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLVFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMRKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36246808 36247710 + CePI673135_09g019360.1 Cec09g1936 212446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1936 300 MobiDBLite consensus disorder prediction 255 300 - -
Cec09g1936 300 MobiDBLite consensus disorder prediction 136 150 - -
Cec09g1936 300 MobiDBLite consensus disorder prediction 1 38 - -
Cec09g1936 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Cec09g1936 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cec09g1936 300 Gene3D - 185 259 - -
Cec09g1936 300 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cec09g1936 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cec09g1936 300 MobiDBLite consensus disorder prediction 130 159 - -
Cec09g1936 300 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Cec09g1936 300 MobiDBLite consensus disorder prediction 259 275 - -
Cec09g1936 300 FunFam Zinc-finger homeodomain protein 2 185 259 - -
Cec09g1936 300 SUPERFAMILY Homeodomain-like 186 259 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1936 Cec-Chr9:36246808 Cec11g0010 Cec-Chr11:170889 2.10E-34 dispersed
Cec09g1936 Cec-Chr9:36246808 Cec09g1937 Cec-Chr9:36258856 7.70E-13 tandem
Cec01g1769 Cec-Chr1:32222572 Cec09g1936 Cec-Chr9:36246808 1.30E-12 wgd
Cec10g1514 Cec-Chr10:29555252 Cec09g1936 Cec-Chr9:36246808 1.50E-80 wgd
Cec05g2662 Cec-Chr5:37235934 Cec09g1936 Cec-Chr9:36246808 3.00E-43 wgd
Cec06g1819 Cec-Chr6:31620399 Cec09g1936 Cec-Chr9:36246808 2.10E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30268 PF04770 ZF-HD_dimer 9.80E-29 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1936 - - - 0.0