Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1936 ATGGATTTAGCCCCAGCTCCCATCACAACTAGTAGTAATAACACCAAATCTCCCGACGCTGACTCCGATACTCCGACAAAGATTCCGCCGTCTTCTTCCCTAAAATCCCTTCCCTTCACCAACGGTGTTCTCAAGCGCCACCATCACCGTCAATCGTCTGTCATTGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCTGCCACACCCACTGATCCCACATCGCTTAAATGCGCCGCATGCGGCTGTCACCGGAATTTCCACCGCCGTGACCCGGAAGACCCAATCTCAACTTTAGCTATCAATACGGCGCCTACTCATGTTATTGAGTATCAGCCTCACCACCGTCATCACCCCCCACCGCCGTCGCTTCCCGGGAACCGAAGCCCGAATTCGGCATCTCCTCCGCCGATCTCGTCGTCGTACTACCCATCTGCGCCGCATATGCTACTGGCGCTTTCAGCCGGGTTGTCGGGTCGTCCGCCGGAAAATATCACTCAGGGGAATAATTCGGTGCTGACGGTGAGTCCGAACACCCGGAAACGGTTTCGGACGAAATTTAGCAATGAGCAGAAGGAAAAAATGCTGGTTTTCGCGGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTTGAAAGAGGAGTTCTCAAAGTATGGATGCATAACAACAAGAATACCATGAGAAAAAAGCCCGACTCCAATGGCACCACCACCGCCGCCGCCGCAACCGCCGCCGTCAACAACAACGAAGATGGACCAGATGGAGGCTTACATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 903 51.16 MDLAPAPITTSSNNTKSPDADSDTPTKIPPSSSLKSLPFTNGVLKRHHHRQSSVIVSYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPSLPGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENITQGNNSVLTVSPNTRKRFRTKFSNEQKEKMLVFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMRKKPDSNGTTTAAAATAAVNNNEDGPDGGLHMHVGSNGSSSSS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36246808 36247710 + CePI673135_09g019360.1 Cec09g1936 212446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1936 300 MobiDBLite consensus disorder prediction 255 300 - -
Cec09g1936 300 MobiDBLite consensus disorder prediction 136 150 - -
Cec09g1936 300 MobiDBLite consensus disorder prediction 1 38 - -
Cec09g1936 300 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Cec09g1936 300 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cec09g1936 300 Gene3D - 185 259 - -
Cec09g1936 300 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cec09g1936 300 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
Cec09g1936 300 MobiDBLite consensus disorder prediction 130 159 - -
Cec09g1936 300 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Cec09g1936 300 MobiDBLite consensus disorder prediction 259 275 - -
Cec09g1936 300 FunFam Zinc-finger homeodomain protein 2 185 259 - -
Cec09g1936 300 SUPERFAMILY Homeodomain-like 186 259 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1936 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1936 Cec-Chr9:36246808 Cec11g0010 Cec-Chr11:170889 2.10E-34 dispersed
Cec09g1936 Cec-Chr9:36246808 Cec09g1937 Cec-Chr9:36258856 7.70E-13 tandem
Cec01g1769 Cec-Chr1:32222572 Cec09g1936 Cec-Chr9:36246808 1.30E-12 wgd
Cec10g1514 Cec-Chr10:29555252 Cec09g1936 Cec-Chr9:36246808 1.50E-80 wgd
Cec05g2662 Cec-Chr5:37235934 Cec09g1936 Cec-Chr9:36246808 3.00E-43 wgd
Cec06g1819 Cec-Chr6:31620399 Cec09g1936 Cec-Chr9:36246808 2.10E-14 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1176 . 52 246 ZF-HD Transcription Factor Family AT5G65410 51.0 8.5e-46 181.0
Cec08g1176 . 22 242 ZF-HD Transcription Factor Family AT4G24660 50.9 1.6e-50 196.4
Cec04g1544 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.8e-47 185.7
Cec10g0867 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.3 1.2e-40 163.7
Cec11g0010 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.5e-51 200.3
Cec11g0010 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 5.0e-55 211.8
Cec04g1655 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Cec10g1514 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cec09g1936 . 6 254 ZF-HD Transcription Factor Family AT5G15210 53.0 1.4e-50 196.8
Cec10g1514 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cec09g1936 . 16 258 ZF-HD Transcription Factor Family AT3G28920 58.8 4.8e-58 221.9
Cec09g1936 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 8.0e-51 198.0
Cec10g1514 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cec09g1936 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 7.8e-48 187.6
Cec11g0010 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.5e-51 200.3
Cec08g1176 . 22 242 ZF-HD Transcription Factor Family AT4G24660 50.9 1.6e-50 196.4
Cec04g1544 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.8e-47 185.7
Cec10g0867 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.3 1.2e-40 163.7
Cec09g1936 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 8.0e-51 198.0
Cec10g1514 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cec04g1655 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Cec08g1176 . 52 246 ZF-HD Transcription Factor Family AT5G65410 51.0 8.5e-46 181.0
Cec09g1936 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 7.8e-48 187.6
Cec10g1514 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cec09g1936 . 6 254 ZF-HD Transcription Factor Family AT5G15210 53.0 1.4e-50 196.8
Cec11g0010 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 5.0e-55 211.8
Cec10g1514 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cec09g1936 . 16 258 ZF-HD Transcription Factor Family AT3G28920 58.8 4.8e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30268 PF04770 ZF-HD_dimer 9.80E-29 No_clan Cec TF