Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1937 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGAGACTGTGGCTTCCTCTTTCACAGTAAGGAGTGTAAGATATGGGGAGTGCCAAAAGAACCATGCTGCTGGGGTCGGAGGGTACGCAGTTGACGGGTGTCGAGAATTCATGGCGAGTGGCGACGAAGGGACGACCGCTGCACTGACTTGCGCTGCCTGCGGTTGCCACCGGAATTTCCATAGAAGGCAAGTTGGAACTGAGGTAGTTTGCGATTGCTCTTCATCACCCTCAAATGGAACTTGA 291 52.23 MRKRQVVLRRSEEPSRETVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36258856 36259146 + CePI673135_09g019370.1 Cec09g1937 212447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1937 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Cec09g1937 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cec09g1937 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 79 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cec09g1937 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1769 Cec-Chr1:32222572 Cec09g1937 Cec-Chr9:36258856 2.70E-26 dispersed
Cec06g1819 Cec-Chr6:31620399 Cec09g1937 Cec-Chr9:36258856 1.40E-26 dispersed
Cec09g1937 Cec-Chr9:36258856 Cec11g0010 Cec-Chr11:170889 4.80E-17 dispersed
Cec09g1936 Cec-Chr9:36246808 Cec09g1937 Cec-Chr9:36258856 7.70E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30269 PF04770 ZF-HD_dimer 3.30E-30 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1937 - - - 0.0