Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1947 ATGGCTTCCCCTCACCATTCCCATAGCTTCATGTTCCAATCCCGCCCCGCCGATCACCACGAATACGTCCCCTCCGCTTCCCTCAACGCCATCCCCTCCTGCCCTCCTCACCTCTACTTTCACGATGGAGTGGTTCCAGTGATGATGAAGAGATCCATGTCGTTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGGTTATCAGACGATGGATTGGCATTGGGAGAGAAGAAGAAGCGATTAAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGTTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTAGCCAAAGCTTTGGGGTTGCAGCCAAGACAGATTGCTATTTGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAGTTGGAGAGAGATTATGAAGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGCTATTAACATTAAAAACCAAAGACTCCGGCGAGGCAGCGGGGGGCGGCGCCACCATGAACCTAAAGAAAGAAAACGAACGCTGTTGGAGCAGCGACAACAGTTGCGACATTAATCTCGACATCTCAAAGACACAAGCACCAATAAACGGCAGCGGCGGTGGTGGCGGAGGTAGAGCATGTTCTCAACCAGGAATAATCAAAGATCTTTTCCCATCGGCGGCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAACACGGGTCGTCCAGATCAACGGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 915 48.63 MASPHHSHSFMFQSRPADHHEYVPSASLNAIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLTLKTKDSGEAAGGGATMNLKKENERCWSSDNSCDINLDISKTQAPINGSGGGGGGRACSQPGIIKDLFPSAAFRSAAITQLLQHGSSRSTVDHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSSDQNSHFH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36488525 36491333 + CePI673135_09g019470.1 Cec09g1947 212457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1947 304 Gene3D - 77 144 - -
Cec09g1947 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 214 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cec09g1947 304 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Cec09g1947 304 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec09g1947 304 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec09g1947 304 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677(InterPro)
Cec09g1947 304 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677(InterPro)
Cec09g1947 304 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677(InterPro)
Cec09g1947 304 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Cec09g1947 304 Coils Coil 128 169 - -
Cec09g1947 304 SMART HOX_1 79 140 IPR001356 GO:0003677(InterPro)
Cec09g1947 304 Pfam Homeodomain 81 134 IPR001356 GO:0003677(InterPro)
Cec09g1947 304 CDD homeodomain 81 137 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1557 Cec-Chr4:35024362 Cec09g1947 Cec-Chr9:36488525 3.30E-25 dispersed
Cec09g1947 Cec-Chr9:36488525 Cec10g0860 Cec-Chr10:18362584 3.60E-26 dispersed
Cec01g1530 Cec-Chr1:29892233 Cec09g1947 Cec-Chr9:36488525 2.00E-25 wgd
Cec05g2678 Cec-Chr5:37381137 Cec09g1947 Cec-Chr9:36488525 6.90E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30272 PF00046 Homeodomain 2.90E-15 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1947 K09338 - csv:101212093 561.607