Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1985 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTTCATAGACACATTAAACACAACTGGGTTTTAGAGAAGGATTCTCCATCGGTTGCAGTTTCAGAGATAACTAATAGTCCAAGGCGGAAATGGCGGATCTTCAGTCGGTCATCTTCTTCCCCATTTCCGTCAAAACCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGACCCAGTAATTGTCTCCTCTGGTCATACTTTTGAAGCTGCGTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTATTAGATGGTACGAAGCCGGATTTCTCCTCTGTAATACCAAATCTGGCTCTCAAATCCACCATTTTCAATTGGTGTAAAAACTCCTCTTCTGAACACCCCAAACCCCTCGATTTCTCCTCCGCTGAAAAGCTCGTTCGTAAATTCATGGCGGCCCACAGCGAAAGCGATGAGGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACTGAAGTCACTCGTCGAACCTCTCATTTCCACTCGAGCTCAGATGAATCTGTAAGTGCCGCCGTTCCAACTCTGCCCCTTCCTCTTGCGACTCGGCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGACATCGAGATCATTGGTACTCCTAACTTACCCGAAGAAGAAGAGATCATCGCGAAGCTTAAAAGCCCTCAGGTTATTGAGATTGAAGAGGCTGTGACTACGCTGAGAAAAATCACAAGAACTCGAGAGGACACTAGGGTTCATCTCTGTTCTCCTCTGATTCTCTCTGCTCTTCGATCTCTCATCGTCTCAAGGTATACTGGCGTTCAAGTGAATTCAGTTGCAGCGCTTGTAAATCTATCATTAGAGAATTTGAACAAGGTGAAGATCGTACGGTCGGGGATTCTCCCCAATTTGATTGATGTACTGAAAGGGGGTTCGCCGGAGGTTCAGGAACATGCTGCCGGCGCCATTTTCAGCTTAGCTCTCGACGACGACAACAAGACGGCAATCGGCGTATTGGGTGCTCTGCCACCATTGATACGGCTGTTGGTATCCGACTCGGAGCAAACTCGGCACGACTCGGCTCTTGCTCTTTACCACTTATCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGTTCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCCGCCACATGGCCGGCCGTATTTTGCTGATTTTGTGTAATTTAGCAGCGTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGGGAGAACGAGTTGGACTCCGAGTCGACTCGGGAGAGTTGTGTGGCGGTTCTGTTCGGACTCAGTTACGGCGGTTTGAGGTTCAAGGGTCTGGCAAAAACCGCCGGAGCAATGGATGTTTTCATGGCAATGGAGAAAAATGGAAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAATTGCTCGATTCAGGTTGTTTCGGCAGCCGAACTCGGTGTCGACTCGGTGCCGGAATGGACAGATCCACCGCCAACTCGTCCGAATTCTGA 1656 49.09 MEFQEGLMKFMVHRHIKHNWVLEKDSPSVAVSEITNSPRRKWRIFSRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGTKPDFSSVIPNLALKSTIFNWCKNSSSEHPKPLDFSSAEKLVRKFMAAHSESDEELIQGVAENPVVRFNHAATEVTRRTSHFHSSSDESVSAAVPTLPLPLATRPSCCSSSSSSDIEIIGTPNLPEEEEIIAKLKSPQVIEIEEAVTTLRKITRTREDTRVHLCSPLILSALRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSRHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMDVFMAMEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRLGAGMDRSTANSSEF 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36880247 36881902 + CePI673135_09g019850.1 Cec09g1985 212495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1985 551 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec09g1985 551 Pfam Armadillo/beta-catenin-like repeat 345 384 IPR000225 GO:0005515(InterPro)
Cec09g1985 551 Pfam Armadillo/beta-catenin-like repeat 307 343 IPR000225 GO:0005515(InterPro)
Cec09g1985 551 FunFam RING-type E3 ubiquitin transferase 232 508 - -
Cec09g1985 551 Gene3D - 232 507 IPR011989 -
Cec09g1985 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 315 352 IPR000225 GO:0005515(InterPro)
Cec09g1985 551 SMART arm_5 263 303 IPR000225 GO:0005515(InterPro)
Cec09g1985 551 SMART arm_5 425 468 IPR000225 GO:0005515(InterPro)
Cec09g1985 551 SMART arm_5 345 385 IPR000225 GO:0005515(InterPro)
Cec09g1985 551 SMART arm_5 304 344 IPR000225 GO:0005515(InterPro)
Cec09g1985 551 FunFam RING-type E3 ubiquitin transferase 42 136 - -
Cec09g1985 551 Pfam U-box domain 62 132 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec09g1985 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Cec09g1985 551 SUPERFAMILY ARM repeat 237 500 IPR016024 -
Cec09g1985 551 SMART Ubox_2 65 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec09g1985 551 SUPERFAMILY RING/U-box 56 138 - -
Cec09g1985 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 356 398 IPR000225 GO:0005515(InterPro)
Cec09g1985 551 PANTHER U BOX DOMAIN-CONTAINING 47 509 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1985 Cec-Chr9:36880247 Cec11g0628 Cec-Chr11:6917208 2.70E-11 dispersed
Cec01g1494 Cec-Chr1:29572323 Cec09g1985 Cec-Chr9:36880247 1.70E-79 wgd
Cec06g1869 Cec-Chr6:32030403 Cec09g1985 Cec-Chr9:36880247 2.80E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1985 - - - 0.0