Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1990 ATGGCTCCTAGCTCTGTTGTTGTCACAATTGAGAAGCATAACACCTTCCCTTTAGTGGAAATCAATGCCTCTGACTCTTTGTTGCTTCCTGAGAAACAGAAGGCTGCTAGTCCCAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCATGGCTGGCTATGACTGTCAAGACTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAATTGTATAGGTTCATTAAGGCTTTTCTTGTTATTTCAATTGCGGGTTTGATCGTTGAAGTTGTTGCCCACTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTTGAGGTTCATGGGCTTGTTCAATGGTTTTATATTTCCTGGCTTTCGTTTCGAGTTGATTACATTGCTCCACTGGTATTAATGCTTTCCAAGTTCTGCATTGTTCTGTTCCTGATCCAATCTCTCGATCGTCTTGTTCTCTGTTTTGGTTGCTTTTGGATCAAGTTCAAGAAAATCAAACCCACGATTCAAGACGACGCTTATGATTTGGAAGATGCTTCAACTTTTCCTATGGTTCTTGTTCAAATTCCAATGTGTAATGAGAGAGAGGTCTATGCACAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTAGATGATTCAGATGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGATTGATCCGAACTGGATACAAAGCTGGGAATCTCAAGTCTGCCATGGGTTGTGATTACGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTGACTATCCCTCATTTCAAGGGAAATCCTGAGCTGGGTCTTGTTCAAGCTCGTTGGGCGTTTGTAAACAAGGAAGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGCGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGTGTTTGGAGAACGAAAGCACTTGAGGAATCCGGTGGCTGGCTTGAGCGGACGACTGTGGAAGATATGGATATTGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTATAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTCCCTTCAATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTCCTTAGAAAACTCATACTTCCATTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCATATCTCTTGTTTGAGAACACAATGTCTGTCACAAAGTTCAATGCCATGGTTTCGGGGCTATTCCAGCTGGGAAGTTCATACGAATGGGTTGTGACGAAGAAGACAGGACGATCATCCGAATCCGACTTCTTAGCATTCGCAGAGCGAGAGTCGAAAACATCAAACGAGGAGAAGATTCTGAGGAGGCATTCGGAGTCGGGACTCGAGTTGTTGAGTAAATTGAACCAACAAGAGAGGCAAAAGGGTTCAAAGAAGAAGAGAAACAAGGTATATAGAAAAGAGCTTACTCTTGCTTTTCTGCTGCTCACTGCATCGGCTAGAAGCCTGCTGTCAGAACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGTTTGTCATTCCTGGTGTTGGAGATTTTTCAAACAATTTCAACTTTGCTCTCTCTCCCTGATTCAGTTGCAACCATATAA 2028 41.72 MAPSSVVVTIEKHNTFPLVEINASDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWLAMTVKTVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLVISIAGLIVEVVAHFKKWNLRMIQPLELEVHGLVQWFYISWLSFRVDYIAPLVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKFKKIKPTIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPELGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLAFAERESKTSNEEKILRRHSESGLELLSKLNQQERQKGSKKKRNKVYRKELTLAFLLLTASARSLLSEHGVHFYFLLFQGLSFLVLEIFQTISTLLSLPDSVATI 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36938183 36943936 + CePI673135_09g019900.1 Cec09g1990 212500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1990 675 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
Cec09g1990 675 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
Cec09g1990 675 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 118 656 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cec09g1990 675 Coils Coil 600 620 - -
Cec09g1990 675 FunFam probable xyloglucan glycosyltransferase 5 196 420 - -
Cec09g1990 675 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1990 K20887 - - csv:101208151 1224.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2875 Cec-Chr5:38938389 Cec09g1990 Cec-Chr9:36938183 9.10E-267 dispersed
Cec09g0834 Cec-Chr9:7746839 Cec09g1990 Cec-Chr9:36938183 7.20E-235 dispersed
Cec09g1990 Cec-Chr9:36938183 Cec10g1960 Cec-Chr10:34395370 4.20E-107 dispersed
Cec09g1990 Cec-Chr9:36938183 Cec02g2297 Cec-Chr2:40286496 2.20E-108 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g1884 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.6e-57 217.2
Cec05g2875 . 1 695 REM Transcription Factor Family AT2G24630 77.0 0.0e+00 1088.6
Cec05g2887 . 1 708 REM Transcription Factor Family AT2G24630 64.1 1.0e-262 902.9
Cec09g1990 . 6 656 REM Transcription Factor Family AT2G24630 68.9 4.0e-262 901.0
Cec08g1735 . 5 698 REM Transcription Factor Family AT2G24630 66.7 5.7e-261 897.1
Cec09g0834 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cec08g0841 . 37 415 REM Transcription Factor Family AT2G24630 52.2 2.4e-110 396.7
Cec05g2875 . 1 695 REM Transcription Factor Family AT2G24630 77.0 0.0e+00 1088.6
Cec05g2887 . 1 708 REM Transcription Factor Family AT2G24630 64.1 1.0e-262 902.9
Cec09g1990 . 6 656 REM Transcription Factor Family AT2G24630 68.9 4.0e-262 901.0
Cec08g1735 . 5 698 REM Transcription Factor Family AT2G24630 66.7 5.7e-261 897.1
Cec09g0834 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cec08g0841 . 37 415 REM Transcription Factor Family AT2G24630 52.2 2.4e-110 396.7
Cec05g2875 . 1 695 REM Transcription Factor Family AT2G24630 77.0 0.0e+00 1088.6
Cec05g2887 . 1 708 REM Transcription Factor Family AT2G24630 64.1 1.0e-262 902.9
Cec09g1990 . 6 656 REM Transcription Factor Family AT2G24630 68.9 4.0e-262 901.0
Cec08g1735 . 5 698 REM Transcription Factor Family AT2G24630 66.7 5.7e-261 897.1
Cec09g0834 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cec08g0841 . 37 415 REM Transcription Factor Family AT2G24630 52.2 2.4e-110 396.7
Cec09g1884 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.6e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33