Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g1993 ATGGCGGTAAGTGGAAGAAGTTTGATGGAAGGAGTTCTCCCATTTCCGGCGATGATAGCAATGGAGTGTATCAACGTCGGTCTCAACACTCTTTTCAAAGCCGCCACCGCCGCCGGCATGAGCCACCACGTGTTCGTCGTCTATTCTTACTCTTTCGCCGCCCTTCTCCTCCTCCCTTCTCCCTTCATCTCTCGCAGATCCACTCGTCTTCCACGTCTCACTTTCTCAATACTTTCGAAGATCGCTCTTCTCGGATTGATCGGTTCTTCTTCGCAGATTATGGGATACACGGGAATCAATTACAGCTCTCCAACGCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTTGCCATCATCTTCAGGATGGAGAAAGTGGTATTGAAAAGCAATAGCAGTCAAGCCAAAGTGATGGGCACAATAATATCAATAATAGGTGCATTTGTGGTCACATTTTACAAAGGTCCAAGGATCATGTTCTCTTCAGAGCCCATTTCTCTTTCACTTCATCACCATCCACAACTATCTTCTTCAGATTCTGATTGGGTCATTGGCAGCCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGGCAACAGTGATCTTCTTCTACAACTTAACTGTGGCCATCATAGCTGCAGTTGTAGGTGTGATTTTTGAGACAGATCCAAGTGCTTGGATTTTGAGGCAAAATACAGCATTGGCCTCTGTTTTATGCTCTGGACTATTTGGATCATGTTTAAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGGCCAGTGTTCGTAGCAATGTTTAAGCCGTTATCCATCGTTGTCGCGATCGTAATGGGAGTTCTGTTTCTTGGTGATTCTCTATATCTTGGAAGTCTCATTGGAGCATCCATAATATCCATAGGGTTTTACACTGTAATGTGGGGAAAATCAAAAGAAGAAATGGGTGTTGGAGAAGAAAAAGAAGAAGGCCATAGCCATAGTCTTGATGATAACAAGGAATCAAATGAAGATCAAAGAGTACCTCTTCTTGGAAGCTACAACACACAGAGATACAGTGCAGACCATGTATGA 1131 43.5 MAVSGRSLMEGVLPFPAMIAMECINVGLNTLFKAATAAGMSHHVFVVYSYSFAALLLLPSPFISRRSTRLPRLTFSILSKIALLGLIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVVLKSNSSQAKVMGTIISIIGAFVVTFYKGPRIMFSSEPISLSLHHHPQLSSSDSDWVIGSLLLTAEYILVPLWYIVQTKIMKEYPEEATVIFFYNLTVAIIAAVVGVIFETDPSAWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYTVMWGKSKEEMGVGEEKEEGHSHSLDDNKESNEDQRVPLLGSYNTQRYSADHV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36955228 36959875 - CePI673135_09g019930.1 Cec09g1993 212503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g1993 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 158 - -
Cec09g1993 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 228 331 - -
Cec09g1993 376 MobiDBLite consensus disorder prediction 334 357 - -
Cec09g1993 376 MobiDBLite consensus disorder prediction 358 376 - -
Cec09g1993 376 Pfam EamA-like transporter family 202 326 IPR000620 GO:0016020(InterPro)
Cec09g1993 376 Pfam EamA-like transporter family 26 155 IPR000620 GO:0016020(InterPro)
Cec09g1993 376 PANTHER WAT1-RELATED PROTEIN 17 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cec09g1993 376 MobiDBLite consensus disorder prediction 334 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g1993 Cec-Chr9:36955228 Cec10g1461 Cec-Chr10:28946866 3.40E-74 dispersed
Cec09g1993 Cec-Chr9:36955228 Cec09g1995 Cec-Chr9:36970864 2.20E-20 proximal
Cec09g1993 Cec-Chr9:36955228 Cec09g1994 Cec-Chr9:36963820 2.60E-18 tandem
Cec05g2741 Cec-Chr5:37890659 Cec09g1993 Cec-Chr9:36955228 9.50E-53 transposed
Cec10g1459 Cec-Chr10:28930552 Cec09g1993 Cec-Chr9:36955228 4.00E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g1993 - - - 0.0