Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2002 ATGATGTCGGACGGTTTGATCTTTAACCGATCTCCAGGTCACGCCAACATGTTGTTTTTCGGAAGTGGTGATTCCATTCTTCGAGGACCAAGTTTCACGATGGGGATGGAGGAAATTTCAAAGAGGCGACCCTTTTTCAGCTCTCCGGATGACCTGTTTGACGATGACTACTACGATGATCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGTCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTAGATGGAAGACAAAGCAGCTCGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCGTTCTAGCTACGACTTTATTGCTAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAATCCCGAGCCATTTCTGGAGGATCAACTCCTTGTTCCTGTTGTGCAACATGGCATTAAGATTGAAGACCACCATAGTTGCAGGAGCAACGGAAGCGCTGTGCTGGACGAGGACGGTCCTCAACTCTTAGACAGTGGGGATTCGTACCTCTTGAGCAATGACTATGATGGTTGTGTTTTGCCAGTTTTTGGAGTGAACTCGGAGGAGGAAGATGGGAGTGACGACGGTCAGGGTTACTTCTCGGATGTTTATACAACAGCCGATCAGCAGACTCACGAGGGAGAGCCTTTGACCTGGTGGGACTGGACATCGTAA 837 48.03 MMSDGLIFNRSPGHANMLFFGSGDSILRGPSFTMGMEEISKRRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVASLTEKLQAKEVVESSFQAKNPEPFLEDQLLVPVVQHGIKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVLPVFGVNSEEEDGSDDGQGYFSDVYTTADQQTHEGEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37033865 37035904 - CePI673135_09g020020.1 Cec09g2002 212512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2002 278 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Cec09g2002 278 Coils Coil 140 167 - -
Cec09g2002 278 Gene3D - 58 126 - -
Cec09g2002 278 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Cec09g2002 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677(InterPro)
Cec09g2002 278 SMART HOX_1 63 124 IPR001356 GO:0003677(InterPro)
Cec09g2002 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
Cec09g2002 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677(InterPro)
Cec09g2002 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677(InterPro)
Cec09g2002 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 40 198 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cec09g2002 278 CDD homeodomain 65 121 IPR001356 GO:0003677(InterPro)
Cec09g2002 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec09g2002 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g2002 Cec-Chr9:37033865 Cec10g0860 Cec-Chr10:18362584 1.50E-23 dispersed
Cec10g1449 Cec-Chr10:28823661 Cec09g2002 Cec-Chr9:37033865 1.20E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30274 PF00046 Homeodomain 3.40E-17 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2002 K09338 - csv:101210106 503.442