Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2059 ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCAACATCCTCATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGCTGGAGATGCGACCCCAGTTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATTGGATTCGGCAAAAACGCCATCGGCGGCAAAAACGGCCGTTTCTACTTAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACACGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGGCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGTTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGATATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTTGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCACTGCTTCCAGCTATGCAAGAGCTTACAGCCTTAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACTGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG 1245 49.72 MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHQHPHLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPSWETNRKRLADCAIGFGKNAIGGKNGRFYLVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGTASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37643072 37646298 + CePI673135_09g020590.1 Cec09g2059 212569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2059 414 Pfam Pectate lyase 146 331 IPR002022 -
Cec09g2059 414 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Cec09g2059 414 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Cec09g2059 414 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Cec09g2059 414 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Cec09g2059 414 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Cec09g2059 414 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Cec09g2059 414 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Cec09g2059 414 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Cec09g2059 414 FunFam Pectate lyase 65 407 - -
Cec09g2059 414 Gene3D - 65 407 IPR012334 -
Cec09g2059 414 PANTHER PECTATE LYASE 18-RELATED 20 411 IPR045032 GO:0030570(InterPro)
Cec09g2059 414 SMART amb_all 140 337 IPR002022 -
Cec09g2059 414 SUPERFAMILY Pectin lyase-like 49 409 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0436 Cec-Chr3:4737919 Cec09g2059 Cec-Chr9:37643072 7.50E-122 dispersed
Cec04g1882 Cec-Chr4:37361596 Cec09g2059 Cec-Chr9:37643072 5.70E-122 dispersed
Cec05g0410 Cec-Chr5:3382931 Cec09g2059 Cec-Chr9:37643072 2.30E-170 dispersed
Cec06g0796 Cec-Chr6:9552578 Cec09g2059 Cec-Chr9:37643072 3.40E-167 dispersed
Cec08g1811 Cec-Chr8:29105402 Cec09g2059 Cec-Chr9:37643072 2.40E-184 dispersed
Cec09g2059 Cec-Chr9:37643072 Cec10g1498 Cec-Chr10:29345860 2.00E-128 dispersed
Cec09g2059 Cec-Chr9:37643072 Cec07g0213 Cec-Chr7:2141086 1.20E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2059 K01728 - csv:101217834 775.778