Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec09g2059 | ATGGCGGCTTCTTCTTCTCTTTACTTTTTCTTGCTTCTTTTATCTCTTTCTTTCTTCTTGACTATGACTGCTCCAACTTCCAATTCCTCATTGCCTTTGTCTCTTCATCAACATCCTCATCTTGTTGTTCAAGAAGTTCAAAGGAGCATAAATGCATCAAGGAGAAACTTGGGATATTTCTCTTGCGGAACAGGAAACCCAATAGACGATTGCTGGAGATGCGACCCCAGTTGGGAAACCAACCGTAAACGCTTAGCCGATTGCGCCATTGGATTCGGCAAAAACGCCATCGGCGGCAAAAACGGCCGTTTCTACTTAGTCACAGACGCCGGCGACGACGACCCTCTCAACCCACGCCCGGGCACTCTCCGACACGCAGTCATTCAAAACGAACCGTTATGGATCATTTTCAAACGAGACATGGTGATCCAACTCAAGCAAGAACTAGTAATGAACTCATTCAAAACCATCGACGGGCGTGGGGCCAGCGTCCACGTGGCAGGTGGGCCATGCATAACGATCCATTACGCGACAAATATCATAATCCACGGCATCCACATTCACGATTGCAAGAGAGGGGGAAATGGTAATATACGGGACTCCCCACAGCACTCTGGTTGGTGGACTGTATCGGACGGTGATGGAGTGTCGATCTTTGGAGGAAAACATATCTGGATCGACCATTGCTCTTTGTCTAATTGTAATGATGGGTTGATTGATGCGATTCATGGGTCCACAGCTATTACCATATCCAATAACTATATGACACATCATGATAAAGTGATGTTGTTGGGACATAGTGATTCCTACACACAAGATAAAGATATGCAAGTTACTATTGCTTTTAACCATTTTGGTGAAGGACTTGTTCAGCGAATGCCAAGATGCAGACATGGGTATTTCCATGTAGTGAACAACGATTACACCCACTGGGAAATGTACGCCATCGGAGGGAGTGCTTCGCCGACGATATACAGCCAAGGGAACAGATTTGCGGCGCCCTACAACCGCTTCCGGAAGGAGGTAACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACATGATGTTGAACGGCGCCTATTTCCGCCAGTCTGGCGCCGGCACTGCTTCCAGCTATGCAAGAGCTTACAGCCTTAGCGCTAGACCCTCCTCTCTCGTCGGCTCTATCACCGTCACTGCCGGCGCCCTCAACTGCCGCAAGGGCTCCCGCTGCTAG | 1245 | 49.72 | MAASSSLYFFLLLLSLSFFLTMTAPTSNSSLPLSLHQHPHLVVQEVQRSINASRRNLGYFSCGTGNPIDDCWRCDPSWETNRKRLADCAIGFGKNAIGGKNGRFYLVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLKQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPYNRFRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGTASSYARAYSLSARPSSLVGSITVTAGALNCRKGSRC | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 37643072 | 37646298 | + | CePI673135_09g020590.1 | Cec09g2059 | 212569 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec09g2059 | 414 | Pfam | Pectate lyase | 146 | 331 | IPR002022 | - | |
Cec09g2059 | 414 | PRINTS | Pollen allergen Amb family signature | 356 | 380 | IPR018082 | - | |
Cec09g2059 | 414 | PRINTS | Pollen allergen Amb family signature | 88 | 105 | IPR018082 | - | |
Cec09g2059 | 414 | PRINTS | Pollen allergen Amb family signature | 148 | 164 | IPR018082 | - | |
Cec09g2059 | 414 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - | |
Cec09g2059 | 414 | PRINTS | Pollen allergen Amb family signature | 112 | 137 | IPR018082 | - | |
Cec09g2059 | 414 | PRINTS | Pollen allergen Amb family signature | 385 | 408 | IPR018082 | - | |
Cec09g2059 | 414 | PRINTS | Pollen allergen Amb family signature | 212 | 233 | IPR018082 | - | |
Cec09g2059 | 414 | PRINTS | Pollen allergen Amb family signature | 292 | 311 | IPR018082 | - | |
Cec09g2059 | 414 | FunFam | Pectate lyase | 65 | 407 | - | - | |
Cec09g2059 | 414 | Gene3D | - | 65 | 407 | IPR012334 | - | |
Cec09g2059 | 414 | PANTHER | PECTATE LYASE 18-RELATED | 20 | 411 | IPR045032 | GO:0030570(InterPro) | |
Cec09g2059 | 414 | SMART | amb_all | 140 | 337 | IPR002022 | - | |
Cec09g2059 | 414 | SUPERFAMILY | Pectin lyase-like | 49 | 409 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec03g0436 | Cec-Chr3:4737919 | Cec09g2059 | Cec-Chr9:37643072 | 7.50E-122 | dispersed | |
Cec04g1882 | Cec-Chr4:37361596 | Cec09g2059 | Cec-Chr9:37643072 | 5.70E-122 | dispersed | |
Cec05g0410 | Cec-Chr5:3382931 | Cec09g2059 | Cec-Chr9:37643072 | 2.30E-170 | dispersed | |
Cec06g0796 | Cec-Chr6:9552578 | Cec09g2059 | Cec-Chr9:37643072 | 3.40E-167 | dispersed | |
Cec08g1811 | Cec-Chr8:29105402 | Cec09g2059 | Cec-Chr9:37643072 | 2.40E-184 | dispersed | |
Cec09g2059 | Cec-Chr9:37643072 | Cec10g1498 | Cec-Chr10:29345860 | 2.00E-128 | dispersed | |
Cec09g2059 | Cec-Chr9:37643072 | Cec07g0213 | Cec-Chr7:2141086 | 1.20E-168 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec09g2059 | K01728 | - | csv:101217834 | 775.778 |