Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2072 ATGGCAGCAACCATTTCCACAATCTTTCTAATATCACTCTCTAATTTCTTTCTAATAATGTCATTAGGAGTGGAAAGCAGAGCACTTACCGGAGGTCTTTACGGCGCCGGACCATGGCAGACTGCCCACGCTACTTTCTACGGCGGCAATGACGCCTCCGGCACAATGGGCGGGGCGTGCGGTTATGGCAACTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGCTCAGCACAGCTCTGTTCAACGACGGCTACAGCTGCGGGGCTTGTTTTGAGATCAAGTGCGTGAATGACCCACAATGGTGCCATGCCGGTAACCCCTCCATCTTTGTCACAGCCACCAATTTTTGTCCTCCCAATTACGCTCTACCCAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTTCTTAAAATCGCCCAATATCGCGCCGGCATCGTCCCCGTCTCCTTTCGCAGGGTGGCATGTCGAAGGGAGGGAGGGATGAGGTTTACGATCAATGGGTTCAAATATTTCAATTTGGTATTGATAACCAATGTGTGTGGAGCAGGGGATATTGTGAGTGTGAGCATCAAGGGATCGAAGACAGGGTGGATGAGTATGACACGTAATTGGGGTCAAAACTGGCAGTCAAATACTGTTTTGGTGGGTCAATCACTTTCGTTTAGTGTCAAAGGCAGTGATGGTCGGATTTCAACTTCCTCCAATATTGTTCCTTCTCATTGGCAGTTTGGTCAAACTTTCACCGGCAAAAACTTCTGA 792 50.51 MAATISTIFLISLSNFFLIMSLGVESRALTGGLYGAGPWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRREGGMRFTINGFKYFNLVLITNVCGAGDIVSVSIKGSKTGWMSMTRNWGQNWQSNTVLVGQSLSFSVKGSDGRISTSSNIVPSHWQFGQTFTGKNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37762880 37763853 + CePI673135_09g020720.1 Cec09g2072 212582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2072 263 Pfam Expansin C-terminal domain 172 249 IPR007117 -
Cec09g2072 263 Gene3D - 31 167 IPR036908 -
Cec09g2072 263 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Cec09g2072 263 FunFam Expansin 28 167 - -
Cec09g2072 263 Gene3D - 172 263 IPR036749 -
Cec09g2072 263 SMART dpbb_1 74 161 IPR007112 -
Cec09g2072 263 FunFam Expansin 171 263 - -
Cec09g2072 263 PANTHER EXPANSIN-A15 21 263 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576(InterPro)
Cec09g2072 263 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576(InterPro)
Cec09g2072 263 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576(InterPro)
Cec09g2072 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
Cec09g2072 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
Cec09g2072 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
Cec09g2072 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 260 IPR007117 -
Cec09g2072 263 PRINTS Expansin signature 96 107 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 PRINTS Expansin signature 246 262 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 PRINTS Expansin signature 110 120 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 PRINTS Expansin signature 182 203 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 PRINTS Expansin signature 170 182 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 PRINTS Expansin signature 146 159 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 PRINTS Expansin signature 129 146 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 PRINTS Expansin signature 217 238 IPR002963 GO:0009664(InterPro)
Cec09g2072 263 SUPERFAMILY Barwin-like endoglucanases 38 189 IPR036908 -
Cec09g2072 263 CDD DPBB_EXPA_N 38 166 - -
Cec09g2072 263 Pfam Lytic transglycolase 74 161 IPR009009 -
Cec09g2072 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 171 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0141 Cec-Chr3:1400137 Cec09g2072 Cec-Chr9:37762880 7.40E-121 dispersed
Cec07g0818 Cec-Chr7:19128708 Cec09g2072 Cec-Chr9:37762880 3.00E-77 dispersed
Cec09g2072 Cec-Chr9:37762880 Cec11g0996 Cec-Chr11:16789062 2.40E-98 dispersed
Cec02g2116 Cec-Chr2:38725318 Cec09g2072 Cec-Chr9:37762880 2.40E-124 wgd
Cec04g0951 Cec-Chr4:29183375 Cec09g2072 Cec-Chr9:37762880 1.20E-121 wgd
Cec07g0374 Cec-Chr7:3761518 Cec09g2072 Cec-Chr9:37762880 3.40E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2072 - - - 0.0