Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2096 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAACTCAGCTACAAGGAAGTGGTTGTGAGACTAATAATGCTCAACACCTTCCACCTCCGGCACCGCCAACTAGCGGTGGCGGCGGTAGTGGACCTGGCTCGATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTGGCGAAGATACCACAACCGGAAGCCGGGTTAAAATGTCCTAGATGCGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAACCTCGCCACTTTTGCAAGACGTGCCGACGGTACTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTTGGAGGCGGGTGTCGGCGGTCGAGCAAGAGATCAAGCAAAGGAGGAAGCAATAGGTCAAAATCTCCAGGGGGTTCAAGCACTTCAACAAGCACAGTGTCATCAAATAGTTGCACAACAGACATAATTAGCCAACAACTGGGTCATCATCCTCCTCCTCCAACAACCCATTTGCCCTTTTTTTCTCAAAATTTACATCATCTTAGTGATTTTGGGAACCTTGGTTTAAACTTTGAAGCCCTTCAAATTCCTTCACTCCCATCATCAGCTGGAGGAGTTGAATCCTCAATTTTATCAAGTGGAATTATAGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATCAAGATCATCATCATCAACAAGGAGCTGATTTTTCAAATTACCAGCGGTTGTCAAAGCCATTATTGGAGAGTGGATTCAATACTACTACTACTACTACAAATCATCATCAATTGGAGAATATTAATAATAATAATAATAATAGCATGAAAATCTTGGAGGAGACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAACCAAATGATGATCAATTCTGGAATTCTAGTACTACAACAACAACAACACCTGGGAATATTGCATGGAGTAGTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACTCATCTCTTGTAA 1077 41.6 MVFSSVPVFLDPPNWPSQQPTQLQGSGCETNNAQHLPPPAPPTSGGGGSGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPGGSSTSTSTVSSNSCTTDIISQQLGHHPPPPTTHLPFFSQNLHHLSDFGNLGLNFEALQIPSLPSSAGGVESSILSSGIIDHHQWKIPFFANLHQQNGMYSNFMADQDHHHQQGADFSNYQRLSKPLLESGFNTTTTTTNHHQLENINNNNNNSMKILEETQGINNLSRNFLGIQPNDDQFWNSSTTTTTTPGNIAWSSDQISDHFNSTSSTTHLL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37920979 37922226 - CePI673135_09g020960.1 Cec09g2096 212606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2096 358 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec09g2096 358 Pfam Dof domain, zinc finger 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec09g2096 358 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 277 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec09g2096 358 MobiDBLite consensus disorder prediction 1 59 - -
Cec09g2096 358 MobiDBLite consensus disorder prediction 134 155 - -
Cec09g2096 358 MobiDBLite consensus disorder prediction 116 155 - -
Cec09g2096 358 MobiDBLite consensus disorder prediction 11 33 - -
Cec09g2096 358 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2096 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec09g2096 Cec-Chr9:37920979 Cec10g2109 Cec-Chr10:35744102 1.20E-41 dispersed
Cec02g2134 Cec-Chr2:38881337 Cec09g2096 Cec-Chr9:37920979 1.90E-39 wgd
Cec04g0967 Cec-Chr4:29333086 Cec09g2096 Cec-Chr9:37920979 3.20E-34 wgd
Cec07g0366 Cec-Chr7:3608955 Cec09g2096 Cec-Chr9:37920979 3.70E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec03g0636 . 17 181 C2C2-Dof Transcription Factor Family AT1G29160 60.2 4.5e-45 177.9
Cec04g2078 . 6 159 C2C2-Dof Transcription Factor Family AT1G29160 52.0 7.4e-40 160.6
Cec01g0162 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.5e-42 168.7
Cec03g0636 . 17 181 C2C2-Dof Transcription Factor Family AT2G34140 55.6 3.1e-43 171.8
Cec10g2109 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.7 1.3e-40 164.1
Cec09g2096 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 60.4 2.0e-38 156.8
Cec07g0366 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 63.4 1.0e-37 154.5
Cec03g0158 . 68 142 C2C2-Dof Transcription Factor Family AT2G37590 89.3 5.0e-37 152.1
Cec01g0162 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 80.8 1.5e-44 177.2
Cec03g0158 . 1 142 C2C2-Dof Transcription Factor Family AT5G02460 55.8 1.7e-39 160.6
Cec09g2096 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 61.4 1.3e-36 151.0
Cec10g2109 . 54 136 C2C2-Dof Transcription Factor Family AT3G55370 81.9 1.9e-37 153.7
Cec03g0158 . 50 144 C2C2-Dof Transcription Factor Family AT3G55370 73.7 1.2e-36 151.0
Cec04g0967 . 11 129 C2C2-Dof Transcription Factor Family AT3G55370 64.7 1.2e-36 151.0
Cec02g2134 . 57 205 C2C2-Dof Transcription Factor Family AT3G55370 53.8 1.6e-36 150.6
Cec06g1740 . 28 324 C2C2-Dof Transcription Factor Family AT5G60850 53.6 1.7e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30280 PF02701 zf-Dof 4.50E-31 No_clan Cec TF