Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2145 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAATAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTTCATTAGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTGGCAGATGCAGAGAATGAACAAAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCGGCTGTTGCAGCCGCTCAGGCTGCGGCGGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCCGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAACTCCAACAAAAACATGAAAGAGAGCTTGAGCGATTAACTACTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGGAGCAAATTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGAGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAAAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGTGGCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCGATCGGAGACATTGCCAAAGCTTATGCCCGTCGCGATCTCAATCTCGACATCAAGCCTTTTCCAAGGACTCCAACGAGCCAAAAAACGAGCCGAGCTCCGAGTCACCAATCACCGGCGACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATCGGCTGGGGCGGAGACGCTGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGAGGTACCGGCGACACAGCATCGCTGGATCATCGGTGAGGGATGATGAGAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCTAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGCGTTTCCGGAGAAGGGACCGGCGAGTATCGGCGCAAAGAAACGGTTGTCGTTCCCCGCCTCGCCGGCGAATTCGAGGAGGCACTCTGGTCCGCCGAAAATAGACGCTAGTCCGACCAAGAATGTTGCAGAGATAGATTTTACCGGCGAGAGCAGATAG 1458 50.89 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPASLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPRWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRAPSHQSPATPTKAHSSLSAGRKLKPDSPRGIGWGGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAAFPEKGPASIGAKKRLSFPASPANSRRHSGPPKIDASPTKNVAEIDFTGESR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38401423 38404604 - CePI673135_09g021450.1 Cec09g2145 212655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2145 485 MobiDBLite consensus disorder prediction 324 351 - -
Cec09g2145 485 PANTHER IQ-DOMAIN 5-RELATED 6 439 - -
Cec09g2145 485 MobiDBLite consensus disorder prediction 395 411 - -
Cec09g2145 485 Coils Coil 177 197 - -
Cec09g2145 485 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Cec09g2145 485 ProSiteProfiles IQ motif profile. 114 142 - -
Cec09g2145 485 MobiDBLite consensus disorder prediction 377 394 - -
Cec09g2145 485 MobiDBLite consensus disorder prediction 1 35 - -
Cec09g2145 485 Gene3D iswi atpase 111 149 - -
Cec09g2145 485 MobiDBLite consensus disorder prediction 320 485 - -
Cec09g2145 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2145 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0038 Cec-Chr1:311322 Cec09g2145 Cec-Chr9:38401423 7.40E-26 dispersed
Cec01g0768 Cec-Chr1:8444350 Cec09g2145 Cec-Chr9:38401423 3.80E-27 dispersed
Cec02g0258 Cec-Chr2:2417605 Cec09g2145 Cec-Chr9:38401423 1.20E-13 dispersed
Cec03g1235 Cec-Chr3:27419827 Cec09g2145 Cec-Chr9:38401423 2.80E-33 dispersed
Cec05g1070 Cec-Chr5:9483585 Cec09g2145 Cec-Chr9:38401423 3.40E-23 dispersed
Cec05g1978 Cec-Chr5:31798588 Cec09g2145 Cec-Chr9:38401423 2.30E-29 dispersed
Cec06g0116 Cec-Chr6:1110601 Cec09g2145 Cec-Chr9:38401423 2.50E-24 dispersed
Cec06g0277 Cec-Chr6:3116200 Cec09g2145 Cec-Chr9:38401423 2.00E-29 dispersed
Cec06g0646 Cec-Chr6:7214491 Cec09g2145 Cec-Chr9:38401423 6.80E-16 dispersed
Cec07g1090 Cec-Chr7:26079835 Cec09g2145 Cec-Chr9:38401423 1.60E-25 dispersed
Cec07g1634 Cec-Chr7:31899388 Cec09g2145 Cec-Chr9:38401423 7.30E-22 dispersed
Cec09g0022 Cec-Chr9:231277 Cec09g2145 Cec-Chr9:38401423 6.90E-10 dispersed
Cec09g0072 Cec-Chr9:606154 Cec09g2145 Cec-Chr9:38401423 1.90E-21 dispersed
Cec09g2145 Cec-Chr9:38401423 Cec10g2056 Cec-Chr10:35270494 3.20E-77 dispersed
Cec09g2145 Cec-Chr9:38401423 Cec05g2305 Cec-Chr5:34332935 3.00E-107 transposed
Cec09g2145 Cec-Chr9:38401423 Cec04g1024 Cec-Chr4:29828467 3.00E-107 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g2145 . 1 473 IQD Protein Family AT3G52290 54.7 6.1e-104 374.8
Cec05g2305 . 1779 1988 IQD Protein Family AT2G26410 50.2 2.8e-42 170.2
Cec03g1235 . 50 457 IQD Protein Family AT3G22190 57.8 1.4e-97 353.6
Cec05g1978 . 1 438 IQD Protein Family AT2G26180 62.0 1.8e-121 433.0
Cec04g2056 . 49 322 IQD Protein Family AT2G33990 52.1 7.2e-63 237.7
Cec07g1090 . 133 316 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cec04g2056 . 49 270 IQD Protein Family AT3G15050 50.5 5.4e-55 211.5
Cec07g1090 . 136 309 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cec01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 1.6e-75 280.4
Cec06g0277 . 1 508 IQD Protein Family AT4G00820 50.9 2.1e-114 409.8
Cec05g0021 . 1 455 IQD Protein Family AT4G00820 50.5 1.3e-103 374.0
Cec06g0277 . 1 508 IQD Protein Family AT1G01110 50.2 3.2e-110 396.0
Cec09g0022 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
Cec03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 6.6e-65 245.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40