Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2170 ATGTCGATCTCTTCTCCCTCCGACTCCTTCATTGACTCTCACTTACTCTGTGACGAGGACTCCTCCGGTATTTTGTCCGGAGAGTCGCCGGAGTACTCCTCTGACCTTGAATCGCCGGCCAGCAGTGAGGATTCTATCGCTACTTTCATAGAGGACGAGAGACACTTCGTTCCTGGAATTGATTACTTGTCGCGCTTTCAGTCTCAATCGCTCGATTCTTCCGCAAGAGCCGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAACTACTTGGATCGATTCCTTTATTCTCGCCGCTTACCGGAAACAAATGGGTGGCCATTGCAGCTTCTTTCAGTGGCTTGTTTATCACTAGCAGCTAAAATGGAGGAACCCATTGTTCCTTCATTCGTGGATCTGCAGATTGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTGACAACTTTGAATTGGCGGCTCCGATCCGTAACACCTTTCAGCTTTATCGGATTCTTCGCCTACAAAGTTGATCCCACCGGAACATTTTCCAGTTTTCTCAACTCACGCTCCACGGAAATTATTCTCTCCAATATTCGAGACGCTACCTTTCTTGAGTACTGGCCTTCTTGCATTGCTGCCGCTGCCTTACTCTGTGCGGCAAATGAAATACCCAATTTGACCCTCTTGGATCCTGAACAGGCCGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCGGCTAATGCAACCGTTAACAGCGGAGAGTCATCGGAGGAAGCCGCCGAAAGTGATACCACAGCTCCGAGTCAGAATCCGAGCCGGGTTGAGATATAGTGACTCGTCATCCTCCTCCTCCTCATCAAGGTTACCTTTTAAAAGAAGGAAGTTAAATAATTGCTTGTGGGTAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGACGAATAA 1008 46.53 MSISSPSDSFIDSHLLCDEDSSGILSGESPEYSSDLESPASSEDSIATFIEDERHFVPGIDYLSRFQSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPIVPSFVDLQIEGAKYIFEPRTIRRMELLVLTTLNWRLRSVTPFSFIGFFAYKVDPTGTFSSFLNSRSTEIILSNIRDATFLEYWPSCIAAAALLCAANEIPNLTLLDPEQAESWCNGLSKDKIVGCYRLMQPLTAESHRRKPPKVIPQLRVRIRAGLRYSDSSSSSSSSRLPFKRRKLNNCLWVEDDKENSKFRADE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38626386 38628459 - CePI673135_09g021700.1 Cec09g2170 212680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2170 335 SMART cyclin_7 81 169 IPR013763 -
Cec09g2170 335 SUPERFAMILY Cyclin-like 39 175 IPR036915 -
Cec09g2170 335 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Cec09g2170 335 Pfam Cyclin, C-terminal domain 178 279 IPR004367 -
Cec09g2170 335 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Cec09g2170 335 ProSitePatterns Cyclins signature. 76 107 IPR048258 -
Cec09g2170 335 SUPERFAMILY Cyclin-like 160 277 IPR036915 -
Cec09g2170 335 Pfam Cyclin, N-terminal domain 45 176 IPR006671 -
Cec09g2170 335 Gene3D - 59 176 - -
Cec09g2170 335 PANTHER CYCLINS 35 272 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cec09g2170 335 SMART Cyclin_C_2 178 311 IPR004367 -
Cec09g2170 335 FunFam D2/4-type cyclin 59 176 - -
Cec09g2170 335 Gene3D - 49 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0941 Cec-Chr4:29082920 Cec09g2170 Cec-Chr9:38626386 1.00E-22 dispersed
Cec05g2734 Cec-Chr5:37842827 Cec09g2170 Cec-Chr9:38626386 5.80E-125 dispersed
Cec08g1670 Cec-Chr8:28028145 Cec09g2170 Cec-Chr9:38626386 1.80E-32 dispersed
Cec09g2170 Cec-Chr9:38626386 Cec10g1023 Cec-Chr10:22983748 2.30E-50 dispersed
Cec09g2170 Cec-Chr9:38626386 Cec08g1180 Cec-Chr8:23697968 6.30E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2170 K18810 - csv:101210686 617.846