Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2220 ATGGGTAGCCAAGAAGCTAGACAGCCACTGTTACCAACATCGTCTAATACTGTTGGAAAAAGGTTAATAGATATCCCTAGAAGCAAAAGACGATTGAGGCGCACTAAGAGTGCTCCTCATGCAGATTCTCCTCATACAGAGATCACCTGCACCGGCAACGTTCCGGACACTGGTCCAGTTCCACGTTCAGGATTAATTTTCGGAAATATACACCCAAGTTTCAGAAGAGCAGCCTTAGTTTTAATAATATACCTGGGTATAGGAACTTTATGTTTTTACCTTGTCAGGTACCAAATCAAAGGTGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACTATTGTGACAATGACAACTGTTGGATATGGAGATCTTGTCCCAAACAGTCCTTCCACAAAACTACTAGCTTGTGCTTTCGTTTTCACAGGAATGGCCCTAGTCTGCCTAATACTGAGCAATGCAGCCGACTATTTGGTAGAGAAGCAGGAAATCTTGCTATTTAAAGCCTTCCATAGGCAACAAAATGGCCATTGTGACATTAGGAAAGAAATTGATACTAATAAAGCTAGAAACAAGTGTATAGTGGTGTTTCTCATTCTTCTTTTGTTCATCATTTCTGGGACTGCCTTTCTAGTATTCCTTGAGAAGTTAGATTTTGTCGATGCCTTTTATTGTGTATGTTCTACGATCACGACGCTAGGCTATGGAGATAAAAGCTTCTCGACCAGGTGGGGACGTCTGTTTGCCATCTTCTGGATCTTGATAAGTACCATCACTCTAGCCCAGTTTTTCCTTTCCATCGCTGAGCTAAACACTGAAAGAAGGCAAAAATCTCTGGTGAAGTGGGTTCTATGTAAAAAGGTGACAGACTTAGACCTCGAGGTTGCAGATCTAGATGATGACGGGGTCGTCGGGGCTGCAGAATTTGTCATATACAAGCTCAAGGAGATGGGAAAGATTACTGAAGATGACATTGCACCTGTGTTGAAGGAATTTGAGAATCTTGATGTTGATCAATCAGGAACCCTGTCCAAATCTGATATAACACTTGCTCAATTATCTTAA 1068 41.2 MGSQEARQPLLPTSSNTVGKRLIDIPRSKRRLRRTKSAPHADSPHTEITCTGNVPDTGPVPRSGLIFGNIHPSFRRAALVLIIYLGIGTLCFYLVRYQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPSTKLLACAFVFTGMALVCLILSNAADYLVEKQEILLFKAFHRQQNGHCDIRKEIDTNKARNKCIVVFLILLLFIISGTAFLVFLEKLDFVDAFYCVCSTITTLGYGDKSFSTRWGRLFAIFWILISTITLAQFFLSIAELNTERRQKSLVKWVLCKKVTDLDLEVADLDDDGVVGAAEFVIYKLKEMGKITEDDIAPVLKEFENLDVDQSGTLSKSDITLAQLS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39112448 39113690 + CePI673135_09g022200.1 Cec09g2220 212730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2220 355 PRINTS Two pore domain K+ channel signature 116 144 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cec09g2220 355 PRINTS Two pore domain K+ channel signature 232 241 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cec09g2220 355 Pfam Ion channel 80 160 IPR013099 -
Cec09g2220 355 Pfam Ion channel 200 272 IPR013099 -
Cec09g2220 355 Gene3D - 71 165 - -
Cec09g2220 355 Gene3D - 178 282 - -
Cec09g2220 355 SUPERFAMILY Voltage-gated potassium channels 180 293 - -
Cec09g2220 355 ProSitePatterns EF-hand calcium-binding domain. 298 310 IPR018247 -
Cec09g2220 355 SUPERFAMILY Voltage-gated potassium channels 71 179 - -
Cec09g2220 355 MobiDBLite consensus disorder prediction 29 56 - -
Cec09g2220 355 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Cec09g2220 355 SUPERFAMILY EF-hand 293 350 IPR011992 -
Cec09g2220 355 FunFam Calcium-activated outward-rectifying potassium channel 1 71 166 - -
Cec09g2220 355 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 77 284 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(PANTHER)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1130 Cec-Chr1:17477188 Cec09g2220 Cec-Chr9:39112448 4.10E-90 dispersed
Cec04g2138 Cec-Chr4:39226659 Cec09g2220 Cec-Chr9:39112448 1.60E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2220 K05389 - csv:101216032 603.594