Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec09g2236 ATGGCGTCTCTCGTTTCACTCCTCAATCTCCTTCTCTTCTCTCTGCTCTTAATCGCTCTCGCCGCCGGGCCGCCCTTCGTTGCTTCGCATCACTTCCATGTCGGCGAAAACAGAGGCTGGTCAAACCCTACCGGAAACCACACGCATAGCTTCAACTTCTGGGCCTCACAAAATCGCTTCCATGTCGGCGACACTCTCTATTTCGAGTACAGAAACGATTCGGTTCTCGTTGTGAACTACACGAATTACAGAGGCTGTATCGTTTCGGATCCGATCGCGAAGTTTGAGAATGGAAGCGGCGGTACGATTTTCCGATTGGATCGAGATGGAGATTTCTATTTCATCAGTGGAAATATAGAGCATTGTGTGAACGGACAGAAATTAGCAGTGCGAGTGATGAATGATGATGATGATGATGAATCTGCAGATTCGCCGGAAGGAATGGAGTCGTGGAATTGGGGACCGCCGTCCCTGAATTCGACGGTGAAGGCGACGTTGGCGTCGCCTTTGGTACATTCTGAGACATCAGTCAGACGGTTTCACCCTGTGGCTCCACTCACTGGCACTGCAATGGCCGCTTCAATGGCGGCTTCGGAGCTCGAAGTTGCAGTCTTTATCGATACTGATTTCGGCACCCGCCTGGCAGTTGCCGTTCCGCCGGACATCTCTGCCGGAGCTTTAAAGAGGGAAGTTGAGAGAGTACATTTTAACTGTTTCCCAAGTATAGGAGAGATCAAGGTGGATGGATTCATGGTGAAGCAAAACTCGAACTTCTACCATTTGCCTGACACGTTGCTCACGAAACTCGCTTCCCGGCTGGAAGTGATGCAGTTTCTTCATGTCAAAGCACGACCTTTGAATGAGTTTATCGAGCCTCGTTTACCCAAAAATGCTGATTGTTTCCCCAACCTAAACTATGTCACCTACCGTACGGAAAGCCGAGGCTTCTTGGGAATTGCCTGGAAGAGTAAAATCAGAATCAATGGTAAGAAACATACAAGAAAAAGGTTCAGAAGGATGAATTGCTCATCAAGACTAGTTGGCCGAGGCATCTTAGCCTGGAATACAAGGAGAAAGAGGAAAATAACTAACAAAAAACAGCTTTTAGAGCACATGGAAAAGAACTCTGATATGGGGCATCCGATAAAAGATGCGGAAAATCCGAATGGCTCGATTGATACATCATTGTATCATTGTGTGGCAAATGATGAAGTGAGAATTACAAAACAACAAAAGTTGGCAAGCTCCTCATTGTTAGAGGCGGCCACAGCCAGTGAGTTATCATCTGAAGTCATGTCTGTTTCAAGTATCATAAAAAGATATTTTTCGAGCTATGACGAAGTGAGCAGTGTTTCAAACCAATCAAGCTACAACATTACTCAAAGTCAGCCAGAAGAGTATTTGAAGATGAAGAAGAATATGGCAAGAGGCCCAAGCTTGTTACCTTTGAAATTACCATTTAAAGCATGTTCTCAAAAGCCTGAGAGATCTAAGCTTGGGAAAAGGTTGGTGATGGCTTCATATAATCTTGGGATTTCTCCCATCAGGGGAAGACCAGAAATTTCACTGTGCAATGCTAAAGGTAAAAAGTTTCGAGAACTGACATCTTTAGCTAAAAGTTCTTGTTTTGAGATAAGTGACAGTGAAGATTGA 1653 45.13 MASLVSLLNLLLFSLLLIALAAGPPFVASHHFHVGENRGWSNPTGNHTHSFNFWASQNRFHVGDTLYFEYRNDSVLVVNYTNYRGCIVSDPIAKFENGSGGTIFRLDRDGDFYFISGNIEHCVNGQKLAVRVMNDDDDDESADSPEGMESWNWGPPSLNSTVKATLASPLVHSETSVRRFHPVAPLTGTAMAASMAASELEVAVFIDTDFGTRLAVAVPPDISAGALKREVERVHFNCFPSIGEIKVDGFMVKQNSNFYHLPDTLLTKLASRLEVMQFLHVKARPLNEFIEPRLPKNADCFPNLNYVTYRTESRGFLGIAWKSKIRINGKKHTRKRFRRMNCSSRLVGRGILAWNTRRKRKITNKKQLLEHMEKNSDMGHPIKDAENPNGSIDTSLYHCVANDEVRITKQQKLASSSLLEAATASELSSEVMSVSSIIKRYFSSYDEVSSVSNQSSYNITQSQPEEYLKMKKNMARGPSLLPLKLPFKACSQKPERSKLGKRLVMASYNLGISPIRGRPEISLCNAKGKKFRELTSLAKSSCFEISDSED 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39247578 39254171 + CePI673135_09g022360.1 Cec09g2236 212746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec09g2236 550 CDD OsENODL1_like 32 133 IPR041846 -
Cec09g2236 550 SUPERFAMILY Cupredoxins 29 133 IPR008972 -
Cec09g2236 550 FunFam Early nodulin-like protein 1 29 137 - -
Cec09g2236 550 Gene3D - 29 138 IPR008972 -
Cec09g2236 550 MobiDBLite consensus disorder prediction 135 154 - -
Cec09g2236 550 Pfam Plastocyanin-like domain 49 126 IPR003245 GO:0009055(InterPro)
Cec09g2236 550 ProSiteProfiles Phytocyanin domain profile. 30 134 IPR003245 GO:0009055(InterPro)
Cec09g2236 550 PANTHER BLUE COPPER PROTEIN 19 158 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec09g2236 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g679 . . Bda07g00414 . . . . . . . Cma01g01071 . Car01g00947 . . . Cpe02g00827 Bhi09g01781 . . . . . . . . . . . . . Cone6ag0006 . . . Lsi02g01820 . . . . . . . Bpe11g00591 . . Bma14g00678 . Cmo01g01114 . . . . . . . . . . . . . . Cla09g02083 Cam09g2171 Cec09g2236 . . . . . . Chy01g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012285 1 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29